v0.0.13

Update COSMIC 3.3

v0.0.12

Add "input_type" parameter
Change "vcf_opts" parameter to "context_type"
Change "signature_subgroups" parameter to "exclude_signature_subgroups"

v0.0.11

Integration of VCF sample files as input for assignment

v0.0.10

• Reset reference genome to GRCh37 if a not supported genome is selected.
• Add support for COSMIC exome reference signatures

v0.0.9

• Make consistent MutationType column
• Update subgroups

v0.0.8

• Added support for COSMIC v3.3
• Fixed bugs with signature subtypes
• Added support for Copy Number Signatures

v0.0.7

Resolves a bug with the usage of signature subgroups in decompose fit.

v0.0.6

1. Added a new option for "new signature threshold".
2. Added Signature subgroups options.
3. Fixed issues with custom signature database compatibility with different context types for COSMIC fit.
4. "Collapse to SBS96" bug fix for cosmic fit.
5. Fixed custom signature database bug for decompose_fit.
6. Fixed issues with SigProfilerExtractor integration.
7. Updated Readme file to include more details about the options.

v0.0.5

• Has analyzer that performs 1. Denovo fitting 2. Decomposition of denovo signatures and subsequent fitting 3. Fitting with COSMIC/custom database.
• Linked with SigProfilerExtractor instead of its decompose module.