diff --git a/docs/demo.md b/docs/demo.md index ab51ea1b..ef0070e0 100644 --- a/docs/demo.md +++ b/docs/demo.md @@ -11,7 +11,7 @@ Download 4 SRA samples and run single-sample assembly with co-binning. ```bash binchicken single \ - --forward SRR8334323 SRR8334324 SRR6797127 SRR6797128 --sra \ + --forward SRR14271365 SRR14271372 ERR2281802 ERR2281803 --sra \ --cores 16 --output binchicken_single_assembly ``` @@ -23,7 +23,7 @@ This will produce metagenome-assembled genomes (MAGs) from each sample. ```bash binchicken single \ - --forward SRR8334323 SRR8334324 SRR6797127 SRR6797128 --sra \ + --forward SRR14271365 SRR14271372 ERR2281802 ERR2281803 --sra \ --run-aviary --cores 64 --output binchicken_single_assembly ``` @@ -47,8 +47,8 @@ binchicken iterate \ --run-aviary --cores 64 --output binchicken_3_coassembly ``` -As you might expect from checking the sample sources (e.g. [SRR8334323](https://sandpiper.qut.edu.au/run/SRR8334323)), -the SRR8334323/SRR8334324 and SRR6797127/SRR6797128 pairs are suggested for coassembly. +As you might expect from checking the sample sources (e.g. [SRR14271365](https://sandpiper.qut.edu.au/run/SRR14271365)), +the SRR14271365/SRR14271372 and ERR2281802/ERR2281803 pairs are suggested for coassembly. ## Coassembly with co-binning @@ -56,7 +56,7 @@ Alternatively, you can start with coassembly, optionally providing your own geno ```bash binchicken coassemble \ - --forward SRR8334323 SRR8334324 SRR6797127 SRR6797128 --sra \ + --forward SRR14271365 SRR14271372 ERR2281802 ERR2281803 --sra \ --genomes-list genomes.txt \ --run-aviary --cores 64 --output binchicken_coassembly ```