diff --git a/dockerfile b/dockerfile new file mode 100644 index 0000000..660085d --- /dev/null +++ b/dockerfile @@ -0,0 +1,13 @@ +# syntax=docker/dockerfile:1 + +FROM fnndsc/ubuntu-python3 + +WORKDIR /app + +COPY requirements.txt requirements.txt +RUN pip3 install -r requirements.txt + +COPY . . + + + diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..0f5d450 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,11 @@ +pydicom>=1.3.0 +numpy>=1.17.2 +scikit_image>=0.15.0 +torch>=1.7.1 +torchvision +scipy>=1.3.1 +SimpleITK==1.2.4 +#skimage +fill_voids +tqdm +tensorflow==2.5.0 \ No newline at end of file