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@article{Biggs2010,
title = {{3D deconvolution microscopy}},
year = {2010},
journal = {Current Protocols in Cytometry},
author = {Biggs, David S.C.},
number = {SUPPL. 52},
pages = {1--20},
isbn = {0471142956},
doi = {10.1002/0471142956.cy1219s52},
issn = {19349297},
keywords = {Confocal, Deblurring, Deconvolution, Fluorescence, Image restoration, Point spread function, Widefield}
}
@article{Galland2015,
title = {{3D high-and super-resolution imaging using single-objective SPIM}},
year = {2015},
journal = {Nature Methods},
author = {Galland, Remi and Grenci, Gianluca and Aravind, Ajay and Viasnoff, Virgile and Studer, Vincent and Sibarita, Jean Baptiste},
number = {7},
pages = {641--644},
volume = {12},
doi = {10.1038/nmeth.3402},
issn = {15487105}
}
@article{Gao2014,
title = {{3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy}},
year = {2014},
journal = {Nature Protocols},
author = {Gao, Liang and Shao, Lin and Chen, Bi-Chang and Betzig, Eric},
number = {5},
pages = {1083--1101},
volume = {9},
url = {http://www.nature.com/doifinder/10.1038/nprot.2014.087},
isbn = {1754-2189},
doi = {10.1038/nprot.2014.087},
issn = {1754-2189},
pmid = {24722406}
}
@article{Tang2018,
title = {{3D mesoscopic fluorescence tomography for imaging micro-distribution of antibody-photon absorber conjugates during near infrared photoimmunotherapy in vivo}},
year = {2018},
journal = {Journal of Controlled Release},
author = {Tang, Qinggong and Nagaya, Tadanobu and Liu, Yi and Horng, Hannah and Lin, Jonathan and Sato, Kazuhide and Kobayashi, Hisataka and Chen, Yu},
number = {December 2017},
pages = {171--180},
volume = {279},
publisher = {Elsevier},
url = {https://doi.org/10.1016/j.jconrel.2018.04.027},
doi = {10.1016/j.jconrel.2018.04.027},
issn = {18734995},
keywords = {Enhanced permeability and retention effect, Fluorescence laminar optical tomography (FLOT), Photoimmunotherapy (PIT), Two-photon microscopy (TPM)}
}
@article{Zhu2018,
title = {{3D NIR-II Molecular Imaging Distinguishes Targeted Organs with High-Performance NIR-II Bioconjugates}},
year = {2018},
journal = {Advanced Materials},
author = {Zhu, Shoujun and Herraiz, Sonia and Yue, Jingying and Zhang, Mingxi and Wan, Hao and Yang, Qinglai and Ma, Zhuoran and Wang, Yan and He, Jiahuan and Antaris, Alexander L. and Zhong, Yeteng and Diao, Shuo and Feng, Yi and Zhou, Ying and Yu, Kuai and Hong, Guosong and Liang, Yongye and Hsueh, Aaron J. and Dai, Hongjie},
number = {13},
month = {3},
pages = {1705799},
volume = {30},
url = {http://doi.wiley.com/10.1002/adma.201705799},
doi = {10.1002/adma.201705799},
issn = {09359648},
keywords = {3D NIR-II molecular imaging, NIR-II confocal, high-performance NIR-II bioconjugate, live ovary imaging, multicolor live molecular imaging}
}
@article{Hang2019,
title = {{A 3D High Resolution Generative Deep-learning Network for Fluorescence Microscopy Image}},
year = {2019},
journal = {bioRxiv},
author = {Hang, Zhou and Shiwei, Li and Qing, Huang and Shijie, Liu and Tingwei, Quan and Cai, Ruiyao and Ert{\"{u}}rk, Ali and Shaoqun, Zeng and Ang, Z H O U H and Hiwei, L I S and Ing, H Uang Q and Hijie, L I U S and Ingwei, Q U A N T and Uiyao, R and Ai, C and Rk, A L I E R T Ü and Haoqun, Z E N G S},
month = {1},
pages = {743179},
volume = {im},
url = {http://biorxiv.org/content/early/2019/08/22/743179.abstract},
doi = {10.1101/743179}
}
@article{Ariel2017,
title = {{A beginner's guide to tissue clearing}},
year = {2017},
journal = {International Journal of Biochemistry and Cell Biology},
author = {Ariel, Pablo},
pages = {35--39},
volume = {84},
doi = {10.1016/j.biocel.2016.12.009},
issn = {18785875},
keywords = {Optical clearing, Organoids, Tissue clearing, Whole organ imaging, Whole organism imaging}
}
@article{Weissleder2001,
title = {{A clearer vision for in vivo imaging}},
year = {2001},
journal = {Nature Biotechnology},
author = {Weissleder, Ralph},
number = {4},
month = {4},
pages = {316--317},
volume = {19},
url = {http://www.nature.com/articles/nbt0401_316},
doi = {10.1038/86684},
issn = {1087-0156},
pmid = {11283581}
}
@article{Power2017,
title = {{A guide to light-sheet fluorescence microscopy for multiscale imaging}},
year = {2017},
journal = {Nature Methods},
author = {Power, Rory M. and Huisken, Jan},
number = {4},
pages = {360--373},
volume = {14},
url = {http://www.nature.com/doifinder/10.1038/nmeth.4224},
doi = {10.1038/nmeth.4224},
issn = {15487105},
pmid = {28362435}
}
@article{Kerstens2019,
title = {{A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples}},
year = {2019},
journal = {BMC Biology},
author = {Kerstens, Axelle and Corthout, Nikky and Pavie, Benjamin and Huang, Zengjin and Vernaillen, Frank and Vande Velde, Greetje and Munck, Sebastian},
number = {1},
pages = {1--17},
volume = {17},
publisher = {BMC Biology},
doi = {10.1186/s12915-018-0614-4},
issn = {17417007},
keywords = {3D imaging, Label-free, Mesoscale, Morphology, Opaque samples, Real color, Tomography}
}
@article{Wu2013,
title = {{A light sheet based high throughput 3D-imaging flow cytometer for phytoplankton analysis}},
year = {2013},
journal = {Optics Express},
author = {Wu, Jianglai and Li, Jianping and Chan, Robert K.Y.},
number = {12},
pages = {14474},
volume = {21},
doi = {10.1364/oe.21.014474}
}
@article{Fahrbach2010a,
title = {{A line scanned light-sheet microscope with phase shaped self-reconstructing beams}},
year = {2010},
journal = {Optics Express},
author = {Fahrbach, Florian O. and Rohrbach, Alexander},
number = {23},
pages = {24229},
volume = {18},
doi = {10.1364/oe.18.024229}
}
@article{Bosschaart2014,
title = {{A literature review and novel theoretical approach on the optical properties of whole blood}},
year = {2014},
journal = {Lasers in Medical Science},
author = {Bosschaart, Nienke and Edelman, Gerda J. and Aalders, Maurice C. G. and van Leeuwen, Ton G. and Faber, Dirk J.},
number = {2},
month = {3},
pages = {453--479},
volume = {29},
url = {http://link.springer.com/10.1007/s10103-013-1446-7 http://www.ncbi.nlm.nih.gov/pubmed/24122065 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3953607},
isbn = {1010301314},
doi = {10.1007/s10103-013-1446-7},
issn = {0268-8921},
pmid = {24122065},
keywords = {absorption coefficient, blood, optical properties, scattering, scattering coefficient, spectroscopy}
}
@inproceedings{Prahl1989,
title = {{A Monte Carlo model of light propagation in tissue}},
year = {1989},
booktitle = {Dosimetry of Laser Radiation in Medicine and Biology},
author = {Prahl, S. A.},
editor = {Mueller, Gerhard J. and Sliney, David H. and Potter, Roy F.},
number = {1989},
month = {1},
pages = {1030509},
volume = {10305},
url = {http://proceedings.spiedigitallibrary.org/proceeding.aspx?doi=10.1117/12.2283590},
doi = {10.1117/12.2283590},
issn = {1996756X}
}
@article{Torres-Garcia2017,
title = {{A new Monte Carlo code for light transport in biological tissue}},
year = {2017},
journal = {Medical {\&} Biological Engineering {\&} Computing},
author = {Torres-Garc{\'{i}}a, Eugenio and Oros-Pantoja, Rigoberto and Aranda-Lara, Liliana and Vieyra-Reyes, Patricia},
pages = {649--655},
publisher = {Medical {\&} Biological Engineering {\&} Computing},
url = {http://link.springer.com/10.1007/s11517-017-1713-z},
doi = {10.1007/s11517-017-1713-z},
issn = {0140-0118},
keywords = {Light transport, Tissue interaction, Tissue optical, ballistic photons, diffuse photons, light transport, properties, tissue interaction, tissue optical}
}
@article{Royer2018,
title = {{A practical guide to adaptive light-sheet microscopy}},
year = {2018},
journal = {Nature Protocols},
author = {Royer, Loïc A. and Lemon, William C. and Chhetri, Raghav K. and Keller, Philipp J.},
number = {11},
pages = {2462--2500},
volume = {13},
publisher = {Springer US},
url = {http://dx.doi.org/10.1038/s41596-018-0043-4},
doi = {10.1038/s41596-018-0043-4},
issn = {17502799}
}
@article{Sandell2011,
title = {{A review of in-vivo optical properties of human tissues and its impact on PDT}},
year = {2011},
journal = {Journal of Biophotonics},
author = {Sandell, Julia L. and Zhu, Timothy C.},
number = {11-12},
month = {11},
pages = {773--787},
volume = {4},
url = {http://www.ncbi.nlm.nih.gov/pubmed/22167862 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3321368 http://doi.wiley.com/10.1002/jbio.201100062},
isbn = {1864-0648},
doi = {10.1002/jbio.201100062},
issn = {1864063X},
pmid = {22167862},
arxivId = {arXiv:1011.1669v3},
keywords = {Laser-tissue interaction, Light propagation, PDT, in-vivo optical properties}
}
@article{Sandell2011a,
title = {{A review of in-vivo optical properties of human tissues and its impact on PDT}},
year = {2011},
journal = {Journal of Biophotonics},
author = {Sandell, Julia L. and Zhu, Timothy C.},
number = {11-12},
pages = {773--787},
volume = {4},
isbn = {1864-0648},
doi = {10.1002/jbio.201100062},
issn = {1864063X},
pmid = {22167862},
arxivId = {arXiv:1011.1669v3},
keywords = {Laser-tissue interaction, Light propagation, PDT, in-vivo optical properties}
}
@misc{Cheong1990,
title = {{A review of the optical properties of biological tissues}},
year = {1990},
booktitle = {IEEE journal of quantum electronics},
author = {Cheong, Wf F and Prahl, S.a. Sa and Welch, a.J. Aj},
number = {12},
pages = {2166--2185},
volume = {26},
url = {http://www.uta.edu/rfmems/N_041101/Reference/133.pdf%5Cnhttp://ieeexplore.ieee.org/xpl/freeabs_all.jsp?tp=&arnumber=64354&isnumber=2327},
isbn = {0018-9197},
doi = {10.1109/3.64354},
issn = {00189197},
pmid = {12778170},
keywords = {Article{\_}TI pour en savoir plus}
}
@article{Azaripour2016,
title = {{A survey of clearing techniques for 3D imaging of tissues with special reference to connective tissue}},
year = {2016},
journal = {Progress in Histochemistry and Cytochemistry},
author = {Azaripour, Adriano and Lagerweij, Tonny and Scharfbillig, Christina and Jadczak, Anna Elisabeth and Willershausen, Brita and Van Noorden, Cornelis J.F.},
number = {2},
pages = {9--23},
volume = {51},
publisher = {Elsevier B.V.},
url = {http://dx.doi.org/10.1016/j.proghi.2016.04.001},
doi = {10.1016/j.proghi.2016.04.001},
issn = {18732186},
keywords = {3D histochemistry, 3D imaging, Clearing, Connective tissue, Extracellular matrix, Gingiva, Light-sheet microscopy, Skin}
}
@article{Azaripour2016a,
title = {{A survey of clearing techniques for 3D imaging of tissues with special reference to connective tissue}},
year = {2016},
journal = {Progress in Histochemistry and Cytochemistry},
author = {Azaripour, Adriano and Lagerweij, Tonny and Scharfbillig, Christina and Jadczak, Anna Elisabeth and Willershausen, Brita and Van Noorden, Cornelis J.F.},
number = {2},
pages = {9--23},
volume = {51},
publisher = {Elsevier B.V.},
url = {http://dx.doi.org/10.1016/j.proghi.2016.04.001},
doi = {10.1016/j.proghi.2016.04.001},
issn = {18732186},
keywords = {3D histochemistry, 3D imaging, Clearing, Connective tissue, Extracellular matrix, Gingiva, Light-sheet microscopy, Skin}
}
@article{Carr2018,
title = {{Absorption by water increases fluorescence image contrast of biological tissue in the shortwave infrared}},
year = {2018},
journal = {Proceedings of the National Academy of Sciences},
author = {Carr, Jessica A. and Aellen, Marianne and Franke, Daniel and So, Peter T. C. and Bruns, Oliver T. and Bawendi, Moungi G.},
number = {37},
month = {9},
pages = {9080--9085},
volume = {115},
url = {http://www.pnas.org/lookup/doi/10.1073/pnas.1803210115},
doi = {10.1073/pnas.1803210115},
issn = {0027-8424}
}
@article{Cabrera2018,
title = {{Absorption Spectra of Ethanol and Water Using a Photothermal Lens Spectrophotometer}},
year = {2018},
journal = {Applied Spectroscopy},
author = {Cabrera, Humberto and Akbar, Jehan and Korte, Dorota and Ashraf, Imrana and Ram{\'{i}}rez-Miquet, Evelio E. and Mar{\'{i}}n, Ernesto and Niemela, Joseph},
number = {7},
month = {7},
pages = {1069--1073},
volume = {72},
url = {http://journals.sagepub.com/doi/10.1177/0003702818759073},
doi = {10.1177/0003702818759073},
issn = {0003-7028},
keywords = {TLS, Thermal lens spectrometry, absorption of ethanol, absorption of water, vibration overtones}
}
@article{Tanzid2018,
title = {{Absorption-enhanced imaging through scattering media using carbon black nano-particles: From visible to near infrared wavelengths}},
year = {2018},
journal = {Journal of Optics (United Kingdom)},
author = {Tanzid, M. and Hogan, N.J. and Robatjazi, H. and Veeraraghavan, A. and Halas, N.J.},
number = {5},
volume = {20},
publisher = {IOP Publishing},
doi = {10.1088/2040-8986/aab3a2},
issn = {20408986},
keywords = {absorber, absorber particles, carbon black, imaging, light scattering, nanoparticles}
}
@article{Tanzid2016,
title = {{Absorption-Induced Image Resolution Enhancement in Scattering Media}},
year = {2016},
journal = {ACS Photonics},
author = {Tanzid, Mehbuba and Hogan, Nathaniel J. and Sobhani, Ali and Robatjazi, Hossein and Pediredla, Adithya K. and Samaniego, Adam and Veeraraghavan, Ashok and Halas, Naomi J.},
number = {10},
month = {10},
pages = {1787--1793},
volume = {3},
url = {http://pubs.acs.org/doi/10.1021/acsphotonics.6b00558},
doi = {10.1021/acsphotonics.6b00558},
issn = {2330-4022},
keywords = {absorption, diffusive transport, imaging, light scattering, resolution}
}
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