From 396f45121f1fe106156890f3ecf04459ffeab0ed Mon Sep 17 00:00:00 2001 From: Oliver Beckstein Date: Sat, 1 Jul 2023 21:58:15 -0700 Subject: [PATCH] update to mamba-org/setup-micromamba fix #251 --- .github/workflows/ci.yaml | 13 +++++++++---- 1 file changed, 9 insertions(+), 4 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 0e24dcfd..54830999 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -52,13 +52,17 @@ jobs: - uses: actions/checkout@v3 - name: mamba environment and package installation - uses: mamba-org/provision-with-micromamba@main + uses: mamba-org/setup-micromamba@v1 with: environment-file: devtools/conda-envs/test_env.yaml - channel-priority: "flexible" + condarc: | + channels: + - conda-forge + - bioconda + channel_priority: flexible cache-downloads: true - cache-env: true - extra-specs: | + cache-environment: true + create-args: >- python=${{ matrix.python-version }} - name: Python version information @@ -73,6 +77,7 @@ jobs: - name: Install pybol (fixture staging tool) run: | python -m pip install pybol + - name: Install GROMACS (${{ matrix.gromacs-version }}) # include mdanalysis here AGAIN to work around micromamba removing mdanalysis # while downgrading libxml2 (see issue #252)