From 1c86336db18bd705793cb83378af22ae23210453 Mon Sep 17 00:00:00 2001 From: Igor Sfiligoi Date: Wed, 10 Jan 2024 13:26:22 -0800 Subject: [PATCH] Fix typo in MANUAL.markdown --- MANUAL.markdown | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/MANUAL.markdown b/MANUAL.markdown index ca553832..b0596418 100644 --- a/MANUAL.markdown +++ b/MANUAL.markdown @@ -1827,13 +1827,15 @@ Spec][SAM]. Specify `--rg` multiple times to set multiple fields. See the --sam-omit-prim-seq + + When printing primary alignments, Bowtie 2 by default will write out the `SEQ` and `QUAL` strings. Specifying this option causes Bowtie 2 to print an asterisk in those fields instead. + - --omit-sec-seq