NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(base::print,TiffPrefilter)
S3method(grid.draw,ggsurvplot)
S3method(print,TiffPrefilter)
export("%>%")
export("%||%")
export(TIFFOptions)
export(app)
export(appUI)
export(classAssignment)
export(compareClones)
export(compareImmuneCells)
export(compareMetabolics)
export(compareSignaling)
export(differentialGeneExpression_LimmaVoom)
export(differentialGeneSignature)
export(differentialHallmarkSets)
export(differentialProteinExpression)
export(exampleClassAssigment)
export(generateClonesPlot)
export(generateClonesWaterfallPlot)
export(generateCopynumberExpressionPlot)
export(generateCopynumberPlot)
export(generateCopynumberWaterfallPlot)
export(generateExpressionHeatmap)
export(generateExpressionPlot)
export(generateExpressionWaterfallPlot)
export(generateGeneSetPlot)
export(generateGeneSignaturePlot)
export(generateGeneSignatureWaterfallPlot)
export(generateHallmarkSetWaterfallPlot)
export(generateImmuneCellWaterfallPlot)
export(generateImmuneCellsPlot)
export(generateKaplanMeierPlot)
export(generateMetabolicsPlot)
export(generateMetabolicsWaterfallPlot)
export(generateMutationPlot)
export(generateMutationalBurdenWaterfallPlot)
export(generateMutationalFractionPlot)
export(generateOtherPropertiesPlot)
export(generateProteinExpressionPlot)
export(generateProteinWaterfallPlot)
export(generateSignalingInputBarplot)
export(getAnalysisDataMutation)
export(getAvailableGeneSignatures)
export(getAvailableHallmarkGeneSets)
export(getAvailableImmuneCellTypes)
export(getAvailableMetabolicPathways)
export(getAvailableSignalingPathways)
export(getCopyNumberAssociation)
export(getExpressionDimRedData)
export(getExpressionDimRedDataGeneSet)
export(getExpressionDimRedDataNGenes)
export(getGSEA)
export(getGeneAnno)
export(getGeneFromSymbol)
export(getHeatmapDataHallmark)
export(getInfoMutation)
export(getInformation)
export(getInputDataSignaling)
export(getMultipleFeaturesAxisData)
export(getMutationAssociation)
export(getOtherPropData)
export(getOtherPropStatistics)
export(getPatientAnnotation)
export(getPatientAnnotationFilter)
export(getPostgresql)
export(getSequencedTissues)
export(getSettings)
export(getTissueAnnotation)
export(getTissueCounts)
export(getTissueDataClones)
export(getTissueDataCopyNumber)
export(getTissueDataCopyNumberById)
export(getTissueDataGeneExpression)
export(getTissueDataGeneExpressionById)
export(getTissueDataGeneSet)
export(getTissueDataGeneSetById)
export(getTissueDataGeneSignature)
export(getTissueDataGeneSignatureById)
export(getTissueDataImmuneCells)
export(getTissueDataImmuneCellsById)
export(getTissueDataMetabolics)
export(getTissueDataMetabolicsById)
export(getTissueDataMutationById)
export(getTissueDataMutationalBurden)
export(getTissueDataRppa)
export(getTissueDataRppaById)
export(getTissueDataSignaling)
export(getTissueDataSignalingById)
export(getTissueGroups)
export(getTissuenameTranslation)
export(getWaterfallDataClones)
export(getWaterfallDataCopyNumber)
export(getWaterfallDataGeneExpression)
export(getWaterfallDataGeneSignatures)
export(getWaterfallDataHallmarkSet)
export(getWaterfallDataImmuneCells)
export(getWaterfallDataMetabolics)
export(getWaterfallDataMutationalBurden)
export(getWaterfallDataRppa)
export(initialSettingsCheck)
export(makePrefilter)
export(makeTextCallback)
export(run)
export(setDbOptions)
export(setTIFF)
export(survivalAnalysis)
export(withTIFF)
import(FutureManager)
import(XIFF)
import(dplyr)
import(ggplot2)
import(shiny)
import(tibble)
import(tidyr)
importFrom(XIFF,"%>%")
importFrom(XIFF,"%||%")
importFrom(XIFF,classAssignment)
importFrom(XIFF,columnTabPanel)
importFrom(XIFF,getGeneSymbol)
importFrom(XIFF,getPostgresql)
importFrom(XIFF,setDbOptions)
importFrom(XIFF,unlistClassAssignment)
importFrom(bslib,nav_item)
importFrom(bslib,page_navbar)
importFrom(glue,glue)
importFrom(grid,grid.draw)
importFrom(logger,log_trace)
importFrom(rlang,`!!!`)
importFrom(shinythemes,shinytheme)
importFrom(tibble,column_to_rownames)
importFrom(tidyr,pivot_wider)
importFrom(withr,with_namespace)