-
Notifications
You must be signed in to change notification settings - Fork 6
/
Copy pathtestout14.html
71 lines (61 loc) · 2.79 KB
/
testout14.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
<HTML>
<HEAD>
<TITLE>SRAssembler Output</TITLE>
</HEAD>
<BODY>
<A NAME=top><A NAME=file1>
<H3>Libraries summary</H3><HR><PRE>
1 library is tested
<B>Library Insert size Paired reads</B>
------------------------------------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 200 1 input/reads1_200.fq,input/reads2_200.fq
</td></tr></table>Paired: 1 : paired-end, 0: single</PRE><H3>Assembly summary</H3><HR></PRE><H3>Assembly summary</H3><HR><PRE>
The final contigs file(<a href="all_contigs.fasta">all_contigs.fasta</a>) are generated from round 4 with k=0
</PRE><H5>The best k and the number of matched reads:</H5></PRE>
<PRE><B>Round Best_k Matched_reads</B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 35 2024
2 25 2976
3 25 3364
4 25 3668
</td></tr></table></PRE>
<H5>N50:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 1839 1582 <B><font color="red">1846</font></B> 1582
2 2033 <B><font color="red">2029</font></B> 2029 1765
3 2033 <B><font color="red">2257</font></B> 2257 1964
4 2033 <B><font color="red">3732</font></B> 3732 3468
</td></tr></table></PRE>
<H5>N90:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 1019 1019 <B><font color="red">339</font></B> 1019
2 1389 <B><font color="red">1235</font></B> 1235 1235
3 1624 <B><font color="red">1470</font></B> 1470 1470
4 1860 <B><font color="red">3732</font></B> 3732 3468
</td></tr></table></PRE>
<H5>Longest contig length:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 1839 1582 <B><font color="red">1846</font></B> 1582
2 2033 <B><font color="red">2029</font></B> 2029 1765
3 2033 <B><font color="red">2257</font></B> 2257 1964
4 2033 <B><font color="red">3732</font></B> 3732 3468
</td></tr></table></PRE>
<H5>Total contigs:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 2 3 <B><font color="red">3</font></B> 3
2 2 <B><font color="red">2</font></B> 2 3
3 3 <B><font color="red">2</font></B> 2 3
4 2 <B><font color="red">1</font></B> 1 2
</td></tr></table>
The red number refers to "Best k"</PRE></PRE><H3>Spliced alignment - GenomeThreader</H3><HR><PRE>
No matches found with GenomeThreader