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<HTML>
<HEAD>
<TITLE>SRAssembler Output</TITLE>
</HEAD>
<BODY>
<A NAME=top><A NAME=file1>
<H3>Libraries summary</H3><HR><PRE>
1 library is tested
<B>Library Insert size Paired reads</B>
------------------------------------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 200 1 input/reads1_200.fq,input/reads2_200.fq
</td></tr></table>Paired: 1 : paired-end, 0: single</PRE><H3>Assembly summary</H3><HR><PRE>
The final contigs file(<a href="all_contigs.fasta">all_contigs.fasta</a>) are generated from round 6 with k=0
</PRE><H5>The best k and the number of matched reads:</H5></PRE>
<PRE><B>Round Best_k Matched_reads</B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 15 2866
2 15 4462
3 25 5320
4 25 5944
5 25 6474
6 25 6912
</td></tr></table></PRE>
<H5>N50:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 <B><font color="red">1758</font></B> 1582 994 1582
2 <B><font color="red">2766</font></B> 2755 2073 1765
3 2921 <B><font color="red">3211</font></B> 2308 1964
4 2904 <B><font color="red">6281</font></B> 5166 4858
5 2904 <B><font color="red">6750</font></B> 6750 5136
6 2904 <B><font color="red">7191</font></B> 5687 5344
</td></tr></table></PRE>
<H5>N90:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 <B><font color="red">453</font></B> 761 453 453
2 <B><font color="red">2206</font></B> 2206 681 681
3 2904 <B><font color="red">2651</font></B> 902 881
4 2904 <B><font color="red">6281</font></B> 1096 1096
5 2904 <B><font color="red">6750</font></B> 6750 1299
6 733 <B><font color="red">7191</font></B> 1503 1422
</td></tr></table></PRE>
<H5>Longest contig length:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 <B><font color="red">1890</font></B> 1674 1890 1661
2 <B><font color="red">2766</font></B> 2755 2206 2206
3 2921 <B><font color="red">3211</font></B> 2650 2650
4 3158 <B><font color="red">6281</font></B> 5166 4858
5 3374 <B><font color="red">6750</font></B> 6750 5136
6 3617 <B><font color="red">7191</font></B> 5687 5344
</td></tr></table></PRE>
<H5>Total contigs:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 <B><font color="red">3</font></B> 3 4 4
2 <B><font color="red">2</font></B> 2 3 4
3 2 <B><font color="red">2</font></B> 3 4
4 3 <B><font color="red">1</font></B> 2 3
5 3 <B><font color="red">1</font></B> 1 3
6 3 <B><font color="red">1</font></B> 2 3
</td></tr></table>
The red number refers to "Best k"</PRE></PRE><H3>Spliced alignment - GenomeThreader</H3><HR><PRE>
Found 1 matches
The detailed GenomeThreader alignment report is <a href="output.aln">output.aln</a>
The contigs aligned to query sequences only can be found in <a href="hit_contigs.fasta">hit_contigs.fasta</a>
<B>Contig Strand Query Score Length Coverage G/P/C </B>
----------------------------------------------------------------------------------------------------------
contig1 - LOC_Os06g04560.1 0.698 2521 0.942 P
Length: cumulative length of scored exons
Cov G/P/C: coverage of contig (G) or cDNA (C) or protein (P), whichever is highest
</PRE><H3>Gene Finding - Snap</H3><HR><PRE>
The detailed Snap report is <a href="output.ano">output.ano</a>