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Work Item 1: Refactor from GATK3 to ABRA2 #24

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crashfrog opened this issue Apr 24, 2023 · 0 comments

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crashfrog commented Apr 24, 2023

GATK3 is increasingly difficult to find and install, and isn't open; refactor onto ABRA2 for read remapping around indels.

https://github.com/mozack/abra2

crashfrog self-assigned this

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