diff --git a/README.md b/README.md index 8106a7e..0df65f4 100644 --- a/README.md +++ b/README.md @@ -98,7 +98,7 @@ The command above will generate a folder in the current working directory, conta ### As a framework -#### Generate ems-2 embeddings for your protein +#### Generate esm-2 embeddings for your protein 1. Generate fasta sequence in bulk, use script 'get_fasta.py' ```bash usage: get_fasta.py [-h] pdb_dir output_fasta_name @@ -186,4 +186,4 @@ The command above will generate a folder in the current working directory, conta model.test(hdf5 = "tmpdir/GNN_esm_prediction.hdf5") ``` ### Note about input pdb files -To make sure the mapping between interface residue and ems-2 embeddings are correct, make sure that for all the chains, residue numbering in the PDB file is continuous and starts with residue '1'. We provide a script (scripts/pdb_renumber.py) to do the numbering. +To make sure the mapping between interface residue and esm-2 embeddings is correct, make sure that for all the chains, residue numbering in the PDB file is continuous and starts with residue '1'. We provide a script (scripts/pdb_renumber.py) to do the numbering.