(bidscoin) [lolo:bidscoin_tutorial: 552] $ bidscoin -t
INFO | --------- Testing the BIDScoin's core functionality ---------
INFO | Running bidsmap checks:
INFO | Reading: /Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/heuristics/bidsmap_dccn.yaml
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/dcm2niix2bids.py'
INFO | Note: NumExpr detected 12 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8.
INFO | NumExpr defaulting to 8 threads.
INFO | Checking the bidsmap run-items:
INFO | Could not validate every run-item in the bidsmap
INFO | Checking the bidsmap datatypes:
SUCCESS | All datatypes in the bidsmap are valid
INFO | Testing the PyQt GUI setup:
ERROR | The installed PyQt version does not seem to work for your system:
dlopen(/Users/dpat/fsl/lib/python3.10/site-packages/PyQt6-6.5.1-py3.10-macosx-11.0-arm64.egg/PyQt6/QtWidgets.abi3.so, 0x0002): Library not loaded: @rpath/QtWidgets.framework/Versions/A/QtWidgets
  Referenced from: <EA9F1D5B-ADF4-3393-AE9D-CDBBD81744EC> /Users/dpat/fsl/lib/python3.10/site-packages/PyQt6-6.5.1-py3.10-macosx-11.0-arm64.egg/PyQt6/QtWidgets.abi3.so
  Reason: tried: '/Users/dpat/fsl/lib/python3.10/site-packages/PyQt6-6.5.1-py3.10-macosx-11.0-arm64.egg/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets' (no such file), '/Users/dpat/fsl/lib/python3.10/site-packages/PyQt6-6.5.1-py3.10-macosx-11.0-arm64.egg/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets' (no such file), '/Users/dpat/fsl/bin/../lib/QtWidgets.framework/Versions/A/QtWidgets' (no such file), '/Users/dpat/fsl/bin/../lib/QtWidgets.framework/Versions/A/QtWidgets' (no such file), '/Library/Frameworks/QtWidgets.framework/Versions/A/QtWidgets' (no such file), '/System/Library/Frameworks/QtWidgets.framework/Versions/A/QtWidgets' (no such file, not in dyld cache)
INFO | Testing the DRMAA setup:
WARNING | The DRMAA library could not be imported. This is OK if you want to run pydeface locally and not use the option to distribute jobs on a compute cluster
No module named 'drmaa'
INFO | Executable BIDScoin tools:
INFO | - bidscoin
INFO | - bidscoiner
INFO | - bidseditor
INFO | - bidsmapper
INFO | - bidsparticipants
INFO | - deface
INFO | - dicomsort
INFO | - echocombine
INFO | - medeface
INFO | - physio2tsv
INFO | - plotphysio
INFO | - rawmapper
INFO | - skullstrip
INFO | - slicereport
INFO | Installed template bidsmaps (/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/heuristics):
INFO | - bidsmap_sst
INFO | - bidsmap_dccn (default)
INFO | Installed plugins (/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins):
INFO | - README
INFO | - pet2bids
INFO | - dcm2niix2bids
INFO | - phys2bidscoin
INFO | - nibabel2bids
INFO | - spec2nii2bids
INFO | --------- Testing the 'README' plugin ---------
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/README.py'
INFO | This is a demo-plugin test routine, validating its working with options: {}
SUCCESS | The'README' plugin functioned correctly
INFO | --------- Testing the 'pet2bids' plugin ---------
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/pet2bids.py'
INFO | Testing the dcm2niix4pet installation:
WARNING | The'pet2bids' plugin did not function correctly
WARNING | Failed test: pet2bids
INFO | --------- Testing the 'dcm2niix2bids' plugin ---------
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/dcm2niix2bids.py'
INFO | Testing the dcm2niix2bids installation:
INFO | Running: dcm2niix -v
ERROR | Failed to run:
dcm2niix -v
Errorcode 3:
Compression will be faster with 'pigz' installed http://macappstore.org/pigz/
Chris Rorden's dcm2niiX version v1.0.20230411  Clang14.0.3 ARM (64-bit MacOS)
v1.0.20230411


SUCCESS | The'dcm2niix2bids' plugin functioned correctly
INFO | --------- Testing the 'phys2bidscoin' plugin ---------
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/phys2bidscoin.py'
INFO | This is the phys2bids-plugin WIP test routine
SUCCESS | The'phys2bidscoin' plugin functioned correctly
INFO | --------- Testing the 'nibabel2bids' plugin ---------
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/nibabel2bids.py'
INFO | Testing the nibabel2bids installation:
INFO | Nibabel version: 5.1.0
SUCCESS | The'nibabel2bids' plugin functioned correctly
INFO | --------- Testing the 'spec2nii2bids' plugin ---------
VERBOSE | Importing plugin: '/Users/dpat/fsl/lib/python3.10/site-packages/bidscoin-4.0.0-py3.10.egg/bidscoin/plugins/spec2nii2bids.py'
INFO | Testing the spec2nii2bids installation:
INFO | Running: spec2nii -v
INFO | Output:
0.6.8

SUCCESS | The'spec2nii2bids' plugin functioned correctly
WARNING | Not all tests finishd successfully (this may be ok, but check the output above)