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Recently we had some examples where studies were published with no reported trait or discovery sample information (mentioned here: [https://github.com//issues/144]). Publication of studies with these major errors should be prohibited in the curation interface, in the same way as publishing with no EFO trait is prohibited.
The full list of errors which should block publication (for the ones in italics the functionality already exists): No EFO trait
No genotyping technology
No Reported trait
No text in Discovery sample information
No structured ancestry
The expected behaviour is:
Curator sets status to "publish study" (either in "Curator information" tab or from Curation homepage)
Curator is presented with error message: "Study: Smith J, pubmed = 12345678 requires review before publication because"
followed by
"no reported trait assigned"
"no Discovery sample information entered"
"no structured ancestry assigned"
This error message lists all errors blocking publication.
See attached screenshot for current error message, generated by attempting to publish a study with no data.
The text was updated successfully, but these errors were encountered:
Attempting to publishing from here does not currently generate any error messages (including EFO and genotyping technology shown in screenshot above). This status change should generate the same error messages as described above.
ljwh2
changed the title
Publication of studies with no reported trait should be blocked in curation interface
Publication of studies with errors should be blocked in curation interface
Aug 11, 2020
Discussed on 19th Aug - decided this needs further investigation to determine what QC of data is required and at what points. Taking into account submitted and curated data. Suggest meeting and discussion between Laura, Jackie, Tudor, Yomi.
Recently we had some examples where studies were published with no reported trait or discovery sample information (mentioned here: [https://github.com//issues/144]). Publication of studies with these major errors should be prohibited in the curation interface, in the same way as publishing with no EFO trait is prohibited.
The full list of errors which should block publication (for the ones in italics the functionality already exists):
No EFO trait
No genotyping technology
No Reported trait
No text in Discovery sample information
No structured ancestry
The expected behaviour is:
followed by
"no reported trait assigned"
"no Discovery sample information entered"
"no structured ancestry assigned"
This error message lists all errors blocking publication.
See attached screenshot for current error message, generated by attempting to publish a study with no data.
The text was updated successfully, but these errors were encountered: