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User reported bug in reported gene field #156

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JalMacArthur opened this issue Aug 6, 2020 · 3 comments
Open

User reported bug in reported gene field #156

JalMacArthur opened this issue Aug 6, 2020 · 3 comments
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Type: Bug Reported problem to be fixed

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@JalMacArthur
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User reported that the "Reported gene" field contains unexpected values. The reported gene field should contain a gene symbol or "NR" if no gene info is reported/extracted. It also contains other values e.g. "-" or is left blank.

I think the user is accessing the data via API but I investigated in the download file (from 14th July 2020 release).

When investigating I also found that many of the gene names in the "Reported gene" field are corrupted and changed to dates when opened in excel.

@JalMacArthur JalMacArthur added the Type: Bug Reported problem to be fixed label Aug 6, 2020
@ljwh2
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ljwh2 commented Jan 26, 2021

@earlEBI please check if this issue still occurs in the latest download

@earlEBI
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earlEBI commented Jan 27, 2021

Checked download file 'gwas_catalog_v1.0.2-associations_e100_r2021-01-14.tsv'.

Yes, this is still an issue.

@ljwh2
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ljwh2 commented Feb 4, 2021

Added to list for cleanup by curators. Moving to icebox for now.

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