Find ChEBI IDs for metabolites

[twhetzel]

For the Schlosser paper, the find the ChEBI ID for the metabolites https://app.zenhub.com/files/2995118/b4dda359-081e-437d-a978-21dafa2eabd5/download.

Once all terms are mapped, import needed terms to EFO:
EBISPOT/efo#726

[aoifemcm]

PMID is 31959995. There's currently two entries, with EFO term 'urinary metabolite measurement' representing 1172 sum stat files/metabolites.

Author supplied some mappings, see email thread '[gwas-info] [gwas-subs #351826] Data submission', [email protected]
"I curated and attached a map file combining the biochemical name, Metabolon Comp_ID and HMDB IDs. We do not have HMDB_IDs for all metabolites (unknowns / X-1234 for example) but this should help."

Metabolon IDs are some metabolite company ID but HMDB links out to CHEBI so might be possible to get CHEBI ids that way. https://hmdb.ca/about

File [attached.]
ID_map_schlosser.xlsx

[ljwh2]

@aoifemcm could you follow this up with Zoe please, and find out if they can do the chebi mapping for us?

[ljwh2]

This issue on hold until curators are ready to spit study