Dockerfile

# Example Galaxy container
#
# to build the docker image, go to root of training repo and
#    docker build -t containername -f Dockerfile .
#
# to run image:
#    docker run -p "8080:80" -t  containername 

FROM quay.io/bgruening/galaxy:20.05
MAINTAINER ELIXIR Belgium

ENV GALAXY_CONFIG_BRAND "SARS-CoV-2 sequence upload"
ENV ENABLE_TTS_INSTALL=True

ADD bin/docker-install-tools.sh /setup-workflow.sh
ADD /data/data-library.yaml /dataDir/data-library.yaml
ADD bin/data_library_download.sh /data_library_download.sh
ADD /tools.yaml /tools.yaml 
ADD /workflow /workflowDir
ADD /bin/tool_conf.xml /galaxy-central/config/tool_conf.xml
ADD /html/images /etc/galaxy/web/images
ADD /html/welcome.html /etc/galaxy/web/welcome.html
ADD /bin/galaxy.yml /etc/galaxy/galaxy.yml
ADD /bin/user_preferences_extra_conf.yml /etc/galaxy/user_preferences_extra_conf.yml


RUN chmod 755 /setup-workflow.sh /data_library_download.sh && \
    /setup-workflow.sh

ENTRYPOINT ["/data_library_download.sh"]