diff --git a/CHANGELOG.md b/CHANGELOG.md index 36510c0..9aea073 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,30 @@ +## v2.0.0 (2022-04-04) +### Feature +* Add length field to VariantRecord ([`9a0e446`](https://github.com/EUCANCan/variant-extractor/commit/9a0e446a307c880221b39849b91c0c9db42b9c25)) +* Change alts to alt ([`8e1dd86`](https://github.com/EUCANCan/variant-extractor/commit/8e1dd86e8bae8094e047278a6c8fe60efb46eba6)) +* Include variant_type in VariantRecord ([`2fe8b37`](https://github.com/EUCANCan/variant-extractor/commit/2fe8b3702f1ababdb6c75290651b1f3f48f0e0a4)) +* Add `qual` field ([`4d23686`](https://github.com/EUCANCan/variant-extractor/commit/4d236869d1457c504860b9e5b482215fc45475be)) +* Remove INDEL_DEL and INDEL_INS ([`e7bbd40`](https://github.com/EUCANCan/variant-extractor/commit/e7bbd40afc84178e02372957b4060ec853e1a297)) +* Add only_pass parameter ([`39d7b41`](https://github.com/EUCANCan/variant-extractor/commit/39d7b4120ce9dd389febc273a91f970af5b8bf30)) +* Add support for SGLs ([#1](https://github.com/EUCANCan/variant-extractor/issues/1)) ([`f3621c0`](https://github.com/EUCANCan/variant-extractor/commit/f3621c0c9a6b6ea673666d61094f157a09b1acbe)) + +### Fix +* Divide INV into bracket notation ([`c18a40c`](https://github.com/EUCANCan/variant-extractor/commit/c18a40c3af15b9935150fedbe62b8bad40aa72d7)) +* Fix SGL regex ([`b58c867`](https://github.com/EUCANCan/variant-extractor/commit/b58c867597a86bddee0df72e6ee18baa1868b114)) + +### Breaking +* VariantRecord.alts no longer contains a list, it has been changed to VariantRecord.alt ([`8e1dd86`](https://github.com/EUCANCan/variant-extractor/commit/8e1dd86e8bae8094e047278a6c8fe60efb46eba6)) +* read_vcf() no longer returns a tuple of VariantType and VariantRecord. It now returns a list of just VariantRecord ([`2fe8b37`](https://github.com/EUCANCan/variant-extractor/commit/2fe8b3702f1ababdb6c75290651b1f3f48f0e0a4)) +* Now INDEL_DEL and INDEL_INS are treated like DEL and INS ([`e7bbd40`](https://github.com/EUCANCan/variant-extractor/commit/e7bbd40afc84178e02372957b4060ec853e1a297)) + +### Documentation +* Update documentation link ([`d488f34`](https://github.com/EUCANCan/variant-extractor/commit/d488f346f4ac171d7b8a54c85a3d54f58d6014ba)) +* Update docs about imprecise breakends ([`b5b7e4d`](https://github.com/EUCANCan/variant-extractor/commit/b5b7e4db8f5f7bb030cfeade323b1e7c2b90f00e)) +* Update docs with pip installation ([`d3a4a53`](https://github.com/EUCANCan/variant-extractor/commit/d3a4a5351ad9735a3feb6382ade4073a1f91a6a0)) + ## v1.1.0 (2022-03-23) ### Feature * Import implementation ([`9241bc1`](https://github.com/Rapsssito/variant-extractor/commit/9241bc18298f0783718b47d10d528671ecedf30b)) diff --git a/src/variant_extractor/__init__.py b/src/variant_extractor/__init__.py index 192b2ad..6e23b5f 100644 --- a/src/variant_extractor/__init__.py +++ b/src/variant_extractor/__init__.py @@ -3,5 +3,5 @@ # BSC AS IS License from .VariantExtractor import VariantExtractor -__version__ = '1.1.0' +__version__ = '2.0.0' __author__ = 'Rapsssito'