From c3caf87ef0ef0fa404f32bbe9a6a3a312121bdf0 Mon Sep 17 00:00:00 2001
From: pchaumeil <p.chaumeil@gmail.com>
Date: Fri, 26 Mar 2021 15:06:01 +1000
Subject: [PATCH] CLI issue when using scratch_dir in classify_wf (issue #311)
 .

---
 gtdbtk/main.py | 2 --
 1 file changed, 2 deletions(-)

diff --git a/gtdbtk/main.py b/gtdbtk/main.py
index 807f1e49..a85e2531 100644
--- a/gtdbtk/main.py
+++ b/gtdbtk/main.py
@@ -712,8 +712,6 @@ def parse_options(self, options):
             options.max_consensus = None
             options.rnd_seed = None
             options.skip_trimming = False
-            options.scratch_dir = None
-            options.recalculate_red = False
 
             self.align(options)