README.md

pyRawTools

pyRawTools is a Python package for Windows/Linux/Mac processing raw data from mass spectrometry experiments. Base on RawTools and UNIX command line.

Install

1. Must install mono
   1. For macOS, use brew to install mono

    brew install mono

   2. For Linux, use apt or yum to install mono

    sudo apt install mono-complete

2. Install or Build

   1. Install

      2. pip install pyRawTools

   2. Build

      1. Clone this repository

         git clone https://github.com/EstrellaXD/pyRawTools.git

      2. Install python package

         cd pyRawTools
         python setup.py install

Usage

1. Convert raw file to pandas DataFrame

from pyRawTools import MSLoader


loader = MSLoader()
raw_data, raw_metrix = loader.load('path/to/raw/file.RAW')