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In the current implementation c72ece9, the siibra.volumes.from_pointset method seems to have two issues:
It sets a label value to the pixels before gaussian smoothing, but the intended operation is a KDE which assumed to smooth a peak with value 1 (Smoothing of labels is not a proper operation anyways). So independent of the selected label, the smoothing should be based on setting pixels to 1.
The function states that the kernel bandwidth is in millimeter, but applies it to voxels irrespective of the physical resolution. A translation form millimeter to voxels should be added so the bandwidth unit applies also for image resolutions that differ from 1mm.
The text was updated successfully, but these errors were encountered:
In the current implementation c72ece9, the siibra.volumes.from_pointset method seems to have two issues:
The text was updated successfully, but these errors were encountered: