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I don't really like this idea, to be honest. I think all tabs should be closeable without closing the molecules tab. I.e. when I have run a lot of fragmentations already but want to clear everything away to run a new one find it more easily. Do you see other use cases for "close all"?
Ok, then the "close all" is to be understood differently. I really understood it as "close all tabs (incl. Molecules tab)". But one does not exclude the other. To "only" close the results tabs, I'm with you and would take a different approach.
Please also note that it is not enough just to close the tabs, the data structures must also be cleared.
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