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sessionInfo_BulkRNAseq_GSEA.txt
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R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22631)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] grid tools stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] fgsea_1.24.0 writexl_1.4.2 ggprism_1.0.4 circlize_0.4.15
[5] ComplexHeatmap_2.15.1 pheatmap_1.0.12 edgeR_3.40.2 limma_3.54.0
[9] pca3d_0.10.2 ggplotify_0.1.0 EnhancedVolcano_1.16.0 viridis_0.6.2
[13] viridisLite_0.4.1 RColorBrewer_1.1-3 DT_0.27 data.table_1.14.6
[17] msigdbr_7.5.1 ggrepel_0.9.3 DESeq2_1.38.3 SummarizedExperiment_1.28.0
[21] Biobase_2.58.0 MatrixGenerics_1.10.0 matrixStats_0.63.0 GenomicRanges_1.50.2
[25] GenomeInfoDb_1.34.9 IRanges_2.32.0 S4Vectors_0.36.1 BiocGenerics_0.44.0
[29] ggpubr_0.5.0 lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0
[33] dplyr_1.1.2 purrr_1.0.1 readr_2.1.4 tidyr_1.3.0
[37] tibble_3.2.1 ggplot2_3.4.2 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] colorspace_2.1-0 rjson_0.2.21 ggsignif_0.6.4 XVector_0.38.0 GlobalOptions_0.1.2
[6] base64enc_0.1-3 clue_0.3-63 rstudioapi_0.14 bit64_4.0.5 AnnotationDbi_1.60.2
[11] fansi_1.0.4 codetools_0.2-18 doParallel_1.0.17 cachem_1.0.7 geneplotter_1.76.0
[16] knitr_1.42 jsonlite_1.8.4 broom_1.0.4 annotate_1.76.0 cluster_2.1.4
[21] png_0.1-8 compiler_4.2.2 httr_1.4.6 backports_1.4.1 Matrix_1.5-3
[26] fastmap_1.1.0 cli_3.6.0 htmltools_0.5.4 gtable_0.3.3 glue_1.6.2
[31] GenomeInfoDbData_1.2.9 fastmatch_1.1-3 Rcpp_1.0.10 carData_3.0-5 vctrs_0.6.2
[36] Biostrings_2.66.0 babelgene_22.9 iterators_1.0.14 xfun_0.39 timechange_0.2.0
[41] lifecycle_1.0.3 rstatix_0.7.2 XML_3.99-0.13 zlibbioc_1.44.0 scales_1.2.1
[46] hms_1.1.3 parallel_4.2.2 memoise_2.0.1 gridExtra_2.3 yulab.utils_0.0.6
[51] stringi_1.7.12 RSQLite_2.3.1 foreach_1.5.2 BiocParallel_1.32.6 shape_1.4.6
[56] rlang_1.1.0 pkgconfig_2.0.3 bitops_1.0-7 rgl_1.1.3 lattice_0.20-45
[61] htmlwidgets_1.6.2 cowplot_1.1.1 bit_4.0.5 tidyselect_1.2.0 ggsci_2.9
[66] magrittr_2.0.3 R6_2.5.1 generics_0.1.3 DelayedArray_0.24.0 DBI_1.1.3
[71] pillar_1.9.0 withr_2.5.0 KEGGREST_1.38.0 abind_1.4-5 RCurl_1.98-1.9
[76] crayon_1.5.2 car_3.1-2 utf8_1.2.2 ellipse_0.4.5 tzdb_0.3.0
[81] GetoptLong_1.0.5 locfit_1.5-9.7 blob_1.2.4 digest_0.6.31 xtable_1.8-4
[86] gridGraphics_0.5-1 munsell_0.5.0