glossary.yml

- term: ssh
  definition: Secure Shell
  url: https://en.wikipedia.org/wiki/Secure_Shell
- term: Batch job
  definition: A non-interactive process that occurs on a remote machine. 
- term: Shell
  definition: A command line user interface for Unix-like operating systems.
- term: Scripts
  definition: A script is set of commands that are executed by an operating system or application.
- term: Session
  definition:  A temporary and interactive information interchange between two or more communicating devices, or between a computer and user.
- term: Workload manager
  definition: Software that coordinates job submission to nodes on a cluster. 
- term: SLURM
  definition: A type of workload manager used at the Fred Hutch's gizmo computing cluster.
  url: https://slurm.schedmd.com/
- term: HutchNet ID 
  definition: A user ID specific to the Fred Hutch. 
- term: Workflow manager
  definition: Software that coordinates the submission of jobs, inputs and outputs of individual jobs in a scientific workflow.  
- term: rhino
  definition: The login node (actually several nodes) of the Fred Hutch high performance computing cluster.
- term: gizmo
  definition: The name of the Fred Hutch high performance computing cluster's computing nodes.
- term: node
  definition: An individual server in a collection of networked servers that make up a computing cluster.
- term: Fast File
  definition: The primary storage location for research data. Often available via the "X:" drive or "\\center\fh\fast"
  url: https://sciwiki.fredhutch.org/scicomputing/store_posix/#fast
- term: Scratch
  definition: Scratch storage is a working space primarily for use in the Rhino/Gizmo compute environment. This storage is not backed up
  url: https://sciwiki.fredhutch.org/scicomputing/store_posix/#secure
- term: Economy Cloud
  definition: Economy Cloud is a term for the managed buckets in AWS S3- the "fh-pi-eco" and "fh-pi-eco-public"
  url: https://sciwiki.fredhutch.org/scicomputing/store_objectstore/
- term: mariadb
  definition: A relational database management system based on MySQL, but completely open source.
- term: mysql
  definition: A relational database management system.
- term: db4sci
  definition: An [opensource project](https://github.com/FredHutch/DB4SCI) managing database services on-demand. A Database as a Service system.
- term: mydb
  definition: mydb [here](https://mydb.fredhutch.org) is the SciComp maintained implementation of db4sci.
- term: Singularity
  definition: Singularity is the original name for the Apptainer project
- term: Apptainer
  definition: Apptainer is a system for using containers in an HPC environment
- term: URL
  definition: URL is an acronym for "Uniform Resource Locator". It is a unique identifier for resources on the Internet, AKA a "web address".
- term: minor version of R
  definition: All versions of R that share the same `y` of the `x.y.z` version number. For example, R-4.2.1 and R-4.2.2 share the same minor version number. R-4.1.1 and R-4.2.2 do not.
- term: Prompt
  definition: A "prompt" indicates that the terminal session is ready for input.  Prompts typically have a structure indicating the username and host, followed by a blinking square. AKA "command prompt".