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test_assembly_vertex.c
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#include <genomics/assembly/assembly_vertex.h>
#include "test.h"
int main(int argc, char **argv)
{
struct biosal_assembly_vertex vertex;
int i;
int has_c;
int has_g;
int has_t;
int count;
int code;
BEGIN_TESTS();
biosal_assembly_vertex_init(&vertex);
TEST_INT_EQUALS(biosal_assembly_vertex_parent_count(&vertex), 0);
TEST_INT_EQUALS(biosal_assembly_vertex_child_count(&vertex), 0);
/*
* Add some links
*/
biosal_assembly_vertex_add_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_G);
biosal_assembly_vertex_add_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_C);
biosal_assembly_vertex_add_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_T);
TEST_INT_EQUALS(biosal_assembly_vertex_parent_count(&vertex), 0);
TEST_INT_EQUALS(biosal_assembly_vertex_child_count(&vertex), 3);
has_g = 0;
has_c = 0;
has_t = 0;
count = biosal_assembly_vertex_child_count(&vertex);
for (i = 0; i < count; i++) {
code = biosal_assembly_vertex_get_child(&vertex, i);
if (code == BIOSAL_NUCLEOTIDE_CODE_G) {
has_g = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_C) {
has_c = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_T) {
has_t = 1;
}
}
TEST_INT_EQUALS(has_t, 1);
TEST_INT_EQUALS(has_g, 1);
TEST_INT_EQUALS(has_c, 1);
biosal_assembly_vertex_delete_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_C);
has_g = 0;
has_c = 0;
has_t = 0;
count = biosal_assembly_vertex_child_count(&vertex);
for (i = 0; i < count; i++) {
code = biosal_assembly_vertex_get_child(&vertex, i);
if (code == BIOSAL_NUCLEOTIDE_CODE_G) {
has_g = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_C) {
has_c = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_T) {
has_t = 1;
}
}
TEST_INT_EQUALS(has_t, 1);
TEST_INT_EQUALS(has_g, 1);
TEST_INT_EQUALS(has_c, 0);
code = biosal_assembly_vertex_get_parent(&vertex, 0);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_A);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_C);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_G);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_T);
code = biosal_assembly_vertex_get_child(&vertex, 99);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_A);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_C);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_G);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_T);
biosal_assembly_vertex_add_parent(&vertex, BIOSAL_NUCLEOTIDE_CODE_G);
TEST_INT_EQUALS(biosal_assembly_vertex_parent_count(&vertex), 1);
has_g = 0;
has_c = 0;
has_t = 0;
count = biosal_assembly_vertex_parent_count(&vertex);
for (i = 0; i < count; i++) {
code = biosal_assembly_vertex_get_parent(&vertex, i);
if (code == BIOSAL_NUCLEOTIDE_CODE_G) {
has_g = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_C) {
has_c = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_T) {
has_t = 1;
}
}
TEST_INT_EQUALS(has_t, 0);
TEST_INT_EQUALS(has_g, 1);
TEST_INT_EQUALS(has_c, 0);
biosal_assembly_vertex_destroy(&vertex);
END_TESTS();
return 0;
}