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Copy pathrunviews.sh
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runviews.sh
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set -x
F=$1
A=$2
sudo -v
# Keep-alive: update existing sudo time stamp if set, otherwise do nothing.
while true; do sudo -n true; sleep 60; kill -0 "$$" || exit; done 2>/dev/null &
python tools_perf.py view bam ${F}.bam ${F}_views.csv --out ${F}_out/out_${A}_sam
python tools_perf.py view ram ${F}_lzma_split.root ${F}_views.csv --out ${F}_out/out_${A}_ram_lzma_split
python tools_perf.py view ram ${F}_lzma_split.root ${F}_views.csv --out ${F}_out/out_${A}_ram_lzma_split_index --macro ramview_index.C
python tools_perf.py view ram ${F}_lzma_nosplit.root ${F}_views.csv --out ${F}_out/out_${A}_ram_lzma_nosplit
python tools_perf.py view ram ${F}_lzma_nosplit.root ${F}_views.csv --out ${F}_out/out_${A}_ram_lzma_nosplit_index --macro ramview_index.C
python tools_perf.py view ram ${F}_zlib_split.root ${F}_views.csv --out ${F}_out/out_${A}_ram_zlib_split
python tools_perf.py view ram ${F}_zlib_split.root ${F}_views.csv --out ${F}_out/out_${A}_ram_zlib_split_index --macro ramview_index.C
python tools_perf.py view ram ${F}_zlib_nosplit.root ${F}_views.csv --out ${F}_out/out_${A}_ram_zlib_nosplit
python tools_perf.py view ram ${F}_zlib_nosplit.root ${F}_views.csv --out ${F}_out/out_${A}_ram_zlib_nosplit_index --macro ramview_index.C
python tools_perf.py view ram ${F}_lzma_split.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_lzma_split_cache
python tools_perf.py view ram ${F}_lzma_split.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_lzma_split_index_cache --macro ramview_index.C
python tools_perf.py view ram ${F}_lzma_nosplit.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_lzma_nosplit_cache
python tools_perf.py view ram ${F}_lzma_nosplit.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_lzma_nosplit_index_cache --macro ramview_index.C
python tools_perf.py view ram ${F}_zlib_split.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_zlib_split_cache
python tools_perf.py view ram ${F}_zlib_split.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_zlib_split_index_cache --macro ramview_index.C
python tools_perf.py view ram ${F}_zlib_nosplit.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_zlib_nosplit_cache
python tools_perf.py view ram ${F}_zlib_nosplit.root ${F}_views.csv --cache --out ${F}_out/out_${A}_ram_zlib_nosplit_index_cache --macro ramview_index.C
# cgexec -g memory:limitmem2 python tools_perf.py view bam ${F}.bam ${F}_views.csv --out ${F}_out_mem_${A}limit/out_sam
sudo -K