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issue with stardist2D prediction progresss #318

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jinxsfe opened this issue Apr 16, 2024 · 1 comment
Open

issue with stardist2D prediction progresss #318

jinxsfe opened this issue Apr 16, 2024 · 1 comment
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@jinxsfe
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jinxsfe commented Apr 16, 2024

image
image
I don't understand, here, how to choose x, and y block sizes and min overlaps so that can let data can be predicted. my data dimension is 464*464

@IvanHCenalmor IvanHCenalmor self-assigned this Jul 26, 2024
@IvanHCenalmor
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Dear @jinxsfe,

First of all, sorry for the delay, and thank you so much for reporting this bug.

The issue was not related to the dimensions of the data but was caused by a bug on our side. I have prepared a version of the notebook where this problem has been fixed. However, it is not yet in the main branch as it still requires additional testing. In the meantime, you can find the updated version of the notebook here:

StarDist_2D_ZeroCostDL4Mic.ipynb Open In Colab

Please feel free to test it and let us know if you encounter any further issues or if this resolves the problem.

Thanks again for your valuable feedback!

Iván

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