algorithm_store.json

{
    "name": "Kaplan-Meier on OMOP",
    "partitioning": "horizontal",
    "vantage6_version": "4.5",
    "functions": [
      {
        "name": "kaplan_meier_central",
        "databases": [
          {
            "name": "OMOP CDM Database",
            "description": "Database to use for the Kaplan-Meier curve"
          }
        ],
        "ui_visualizations": [
          {
            "name": "Survival time table",
            "schema": {
              "location": [],
              "columns": []
            },
            "description": "Surival time table for the cohort.",
            "type": "table"
          },
          {
            "name": "Kaplan-Meier curve",
            "properties": {
              "x": "SURV_INT",
              "y": "survival_cdf"
            },
            "description": "Kaplan-Meier curve for the cohort.",
            "type": "line"
          }
        ],
        "arguments": [
          {
            "type": "integer",
            "description": "Task ID of the task that created the cohort in the database.",
            "name": "cohort_task_id"
          },
          {
            "type": "string",
            "description": "The cohort ID to use for the Kaplan-Meier curve.",
            "name": "shared_cohort_id"
          },
          {
            "type": "string",
            "description": "The column name of the time variable.",
            "name": "time_column_name"
          },
          {
            "type": "string",
            "description": "The column name of the censor.",
            "name": "censor_column_name"
          },
          {
            "type": "organization_list",
            "description": "List of organizations to include in the analysis.",
            "name": "organizations_to_include"
          }
        ],
        "description": "Compute a Kaplan-Meier curves for a cohort of patients.",
        "type": "central"
      }
    ],
    "description": "Compute a Kaplan-Meier curves.",
    "image": "harbor2.vantage6.ai/blueberry/kaplan-meier"
  }