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kgcl.owl.ttl
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@prefix IAO: <http://purl.obolibrary.org/obo/IAO_> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix kgcl: <http://w3id.org/kgcl/> .
@prefix linkml: <https://w3id.org/linkml/> .
@prefix oio: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix pav: <http://purl.org/pav/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xml1: <http://www.w3.org/XML/1998/namespace#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
kgcl:ChangeClassType a rdfs:Datatype ;
owl:equivalentClass xsd:anyURI .
kgcl:ChangeSetSummaryStatistic a owl:Class ;
rdfs:label "ChangeSetSummaryStatistic" ;
rdfs:subClassOf kgcl:ChangeLanguageElement ;
skos:definition "A summary statistic for a set of changes of the same type, grouped by zero or more node properties" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:Configuration a owl:Class ;
rdfs:label "Configuration" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:main_synonym_predicate ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:obsoletion_policies ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:synonym_predicates ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:obsolete_node_label_prefix ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:obsoletion_workflow ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:obsolete_node_label_prefix ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:main_synonym_predicate ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:contributor_predicate ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:creator_predicate ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:definition_predicate ],
[ a owl:Restriction ;
owl:allValuesFrom kgcl:ObsoletionPolicyEnum ;
owl:onProperty kgcl:obsoletion_policies ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:name_predicate ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:contributor_predicate ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:obsolete_subclass_of_shadow_property ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:name_predicate ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:obsolete_node_label_prefix ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:contributor_predicate ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:anyURI ;
owl:onProperty kgcl:obsolete_subclass_of_shadow_property ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:definition_predicate ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:synonym_predicates ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:obsolete_subclass_of_shadow_property ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:synonym_predicates ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:name_predicate ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:obsoletion_workflow ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:creator_predicate ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:creator_predicate ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:obsoletion_workflow ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:main_synonym_predicate ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:definition_predicate ],
kgcl:ChangeLanguageElement ;
skos:definition "The meaning of operations can be configured" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:DatatypeChange a owl:Class ;
rdfs:label "DatatypeChange" ;
rdfs:subClassOf kgcl:DatatypeOrLanguageTagChange ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:Session a owl:Class ;
rdfs:label "Session" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom prov:Activity ;
owl:onProperty prov:activity_set ],
[ a owl:Restriction ;
owl:allValuesFrom kgcl:Change ;
owl:onProperty kgcl:change_set ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_set ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty prov:activity_set ],
kgcl:ChangeLanguageElement ;
skos:definition "A session consists of a set of change sets bundled with the activities that generated those change sets" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:has_replacement a owl:ObjectProperty ;
rdfs:label "has_replacement" ;
rdfs:domain kgcl:NodeObsoletion ;
rdfs:range <http://w3id.org/kgcl/om/Node> ;
rdfs:subPropertyOf kgcl:target ;
skos:definition "A single node obsoletion event may be accompanied by one or more suggested replacement nodes" ;
skos:inScheme <https://w3id.org/kgcl> ;
skos:note "In OBO, the replacement term is indicated using IAO:nnnnnn" .
kgcl:new_filler a owl:DatatypeProperty ;
rdfs:label "new_filler" ;
skos:definition "The new filler of an OWL restriction" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:new_property a owl:DatatypeProperty ;
rdfs:label "new_property" ;
skos:definition "The new property of an OWL restriction" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:new_subclass a owl:DatatypeProperty ;
rdfs:label "new_subclass" ;
skos:definition "The new subclass of a subsumption axiom" ;
skos:inScheme <https://w3id.org/kgcl> .
<http://w3id.org/kgcl/om/ClassNode> a owl:Class ;
rdfs:label "ClassNode" ;
rdfs:subClassOf <http://w3id.org/kgcl/om/Node> ;
skos:altLabel "concept" ;
skos:definition "A node that is a class" ;
skos:exactMatch <owl:Class> ;
skos:inScheme <https://w3id.org/kgcl/ontology> .
<http://w3id.org/kgcl/om/InstanceNode> a owl:Class ;
rdfs:label "InstanceNode" ;
rdfs:subClassOf <http://w3id.org/kgcl/om/Node> ;
skos:altLabel "named individual" ;
skos:definition "A node that is an individual" ;
skos:exactMatch <owl:NamedIndividual> ;
skos:inScheme <https://w3id.org/kgcl/ontology> .
<http://w3id.org/kgcl/om/LogicalDefinition> a owl:Class ;
rdfs:label "LogicalDefinition" ;
rdfs:subClassOf <http://w3id.org/kgcl/om/OntologyElement> ;
skos:inScheme <https://w3id.org/kgcl/ontology> .
<http://w3id.org/kgcl/om/property_value_set> a owl:ObjectProperty ;
rdfs:label "property_value_set" ;
rdfs:range <http://w3id.org/kgcl/om/PropertyValue> ;
skos:inScheme <https://w3id.org/kgcl/ontology> .
kgcl:subclass a owl:DatatypeProperty ;
rdfs:label "subclass" ;
skos:definition "The subclass of a subsumption axiom" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:subclass_type a owl:DatatypeProperty ;
rdfs:label "subclass_type" ;
skos:definition "The type of a subclass" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:superclass_type a owl:DatatypeProperty ;
rdfs:label "superclass_type" ;
skos:definition "The type of a superclass" ;
skos:inScheme <https://w3id.org/kgcl> .
prov:agent_set a owl:ObjectProperty ;
rdfs:label "agent_set" ;
rdfs:range prov:Agent ;
skos:inScheme <https://w3id.org/kgcl/prov> .
kgcl:LanguageTagChange a owl:Class ;
rdfs:label "LanguageTagChange" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xml1:lang ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:allValuesFrom xml1:lang ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_value ],
kgcl:DatatypeOrLanguageTagChange ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:AddNodeToSubset a owl:Class ;
rdfs:label "AddNodeToSubset" ;
rdfs:seeAlso <http://wiki.geneontology.org/index.php/Adding_a_Term_to_a_GO_Subset_(Slim)> ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:AddToSubset ],
kgcl:NodeChange ;
skos:altLabel "add term to slim" ;
skos:definition "Places a node inside a subset, by annotating that node" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:ClassCreation a owl:Class ;
rdfs:label "ClassCreation" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty kgcl:superclass ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:superclass ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:superclass ],
kgcl:NodeCreation ;
skos:definition "A node creation where the owl type is 'owl:Class'" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:EdgeLogicalInterpretationChange a owl:Class ;
rdfs:label "EdgeLogicalInterpretationChange" ;
rdfs:subClassOf kgcl:EdgeChange ;
skos:definition "An edge change where the subject, object, and predicate are unchanged, but the logical interpretation changes" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:EdgeObsoletion a owl:Class ;
rdfs:label "EdgeObsoletion" ;
rdfs:seeAlso <https://mondo.readthedocs.io/en/latest/editors-guide/g-logical-axioms/#excluded-subclassof> ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/annotation_set> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Annotation> ;
owl:onProperty <http://w3id.org/kgcl/om/annotation_set> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/subject> ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/subject> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/annotation_set> ],
[ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:Obsoletion ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/subject> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
kgcl:EdgeChange ;
skos:altLabel "relationship obsoletion" ;
skos:definition "An edge change in which an edge is obsoleted." ;
skos:inScheme <https://w3id.org/kgcl> ;
skos:note "Note there is not yet consensus in how this should be done in rdf/owl implementations. Simply marking the edge deprecated with render it visible to most clients. Care must be taken because simply adding a deprecation tag to an axiom does not silence it -- it is still asserted. It is therefore more common to obsolete an edge by shadowing the axiom as an annotation. See the Mondo docs for example" .
kgcl:EdgeRewiring a owl:Class ;
rdfs:label "EdgeRewiring" ;
rdfs:subClassOf kgcl:EdgeChange ;
skos:definition "An edge change where one node is replaced with another, as in the case of obsoletion with replacement" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:LogicalAxiomChange a owl:Class ;
rdfs:label "LogicalAxiomChange" ;
rdfs:subClassOf kgcl:SimpleChange ;
skos:definition "A simple change where a logical axiom is changed, where the logical axiom cannot be represented as an edge" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:MappingCreation a owl:Class ;
rdfs:label "MappingCreation" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/subject> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/annotation_set> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/annotation_set> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/subject> ],
[ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:Creation ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/subject> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Annotation> ;
owl:onProperty <http://w3id.org/kgcl/om/annotation_set> ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
kgcl:EdgeCreation ;
skos:altLabel "xref creation" ;
skos:definition "A specific kind of edge creation in which the created edge is a mapping." ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:MappingPredicateChange a owl:Class ;
rdfs:label "MappingPredicateChange" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:old_value ],
kgcl:NodeMappingChange ;
skos:altLabel "node scope change" ;
skos:definition "A node mapping change where the predicate of a mapping is changed." ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:MappingReplacement a owl:Class ;
rdfs:label "MappingReplacement" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
kgcl:NodeMappingChange ;
skos:definition "A node mapping change where the object of a mapping is changed" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:MetadataAssertionPredicateChange a owl:Class ;
rdfs:label "MetadataAssertionPredicateChange" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
kgcl:NodeMetadataAssertionChange ;
skos:altLabel "node scope change" ;
skos:definition "A node metadata assertion change where the predicate of a metadata assertion is changed." ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:MetadataAssertionReplacement a owl:Class ;
rdfs:label "MetadataAssertionReplacement" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
kgcl:NodeMetadataAssertionChange ;
skos:definition "A node metadata assertion change where the object of a metadata assertion is changed" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:MultiNodeObsoletion a owl:Class ;
rdfs:label "MultiNodeObsoletion" ;
rdfs:seeAlso <https://github.com/cmungall/obo-scripts/blob/master/obo-obsoletify.pl> ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom owl:Thing ;
owl:onProperty kgcl:associated_change_set ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:associated_change_set ],
[ a owl:Restriction ;
owl:allValuesFrom kgcl:NodeObsoletion ;
owl:onProperty kgcl:change_set ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_set ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:associated_change_set ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
kgcl:ComplexChange ;
skos:altLabel "multi class obsoletion",
"multi concept obsoletion",
"multi node deprecation",
"multi term obsoletion" ;
skos:definition "A complex change consisting of multiple obsoletions." ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NameBecomesSynonym a owl:Class ;
rdfs:label "NameBecomesSynonym" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeSynonymChange ;
skos:definition "A node synonym where the name NAME of an node NODE moves to a synonym, and NODE receives a new name. This change consists of compose of (1) a node rename where NAME is replaced by a different name (2) a new synonym" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NewMapping a owl:Class ;
rdfs:label "NewMapping" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
kgcl:NodeMappingChange ;
skos:altLabel "xref change" ;
skos:definition "A node mapping change where a mapping is added to a node" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NewMetadataAssertion a owl:Class ;
rdfs:label "NewMetadataAssertion" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
kgcl:NodeMetadataAssertionChange ;
skos:altLabel "xref change" ;
skos:definition "A node metadata assertion change where a metadata assertion is added to a node" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NewSynonym a owl:Class ;
rdfs:label "NewSynonym" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:qualifier ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:qualifier ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:language ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:language ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:qualifier ],
[ a owl:Restriction ;
owl:allValuesFrom xml1:lang ;
owl:onProperty kgcl:language ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
kgcl:NodeSynonymChange ;
skos:altLabel "add synonym",
"create synonym",
"new alias" ;
skos:definition "A node synonym change where a de-novo synonym is created" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NewTextDefinition a owl:Class ;
rdfs:label "NewTextDefinition" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
kgcl:NodeTextDefinitionChange ;
skos:definition "A node change where a de-novo text definition is created" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeAnnotationReplacement a owl:Class ;
rdfs:label "NodeAnnotationReplacement" ;
rdfs:subClassOf kgcl:NodeAnnotationChange ;
skos:definition "A node annotation change where the change replaces a particular property value. TODO" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeDeepening a owl:Class ;
rdfs:label "NodeDeepening" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeMove ;
skos:definition "A node move in which a node where the destination is a proper descendant of the original location. Note that here descendant applied not just to subclass, but edges of any predicate in the relational graph" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeDeletion a owl:Class ;
rdfs:label "NodeDeletion" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:Deletion ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeChange ;
skos:definition "Deletion of a node from the graph. Note it is recommended nodes are obsoleted and never merged, but this operation exists to represent deletions in ontologies, accidental or otherwise" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeDirectMerge a owl:Class ;
rdfs:label "NodeDirectMerge" ;
rdfs:seeAlso <http://wiki.geneontology.org/index.php/Merging_Ontology_Terms>,
<http://wiki.geneontology.org/index.php/Principles_for_merging_terms> ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom owl:Thing ;
owl:onProperty kgcl:about_node ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:AllowsAutomaticReplacementOfEdges ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:about_node ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:about_node ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:allValuesFrom owl:Thing ;
owl:onProperty kgcl:has_direct_replacement ],
kgcl:NodeObsoletion ;
skos:definition "An obsoletion change in which all metadata (including name/label) from the source node is deleted and added to the target node, and edges can automatically be rewired to point to the target node" ;
skos:inScheme <https://w3id.org/kgcl> ;
skos:note "In the OBO format serialization of the graph, the source node vanishes from the file as a distinct entry and is retained only as an alt_id" .
kgcl:NodeObsoletionWithDirectReplacement a owl:Class ;
rdfs:label "NodeObsoletionWithDirectReplacement" ;
rdfs:seeAlso <http://wiki.geneontology.org/index.php/Merging_Ontology_Terms>,
<http://wiki.geneontology.org/index.php/Principles_for_merging_terms> ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:AllowsAutomaticReplacementOfEdges ],
[ a owl:Restriction ;
owl:allValuesFrom owl:Thing ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeObsoletion ;
skos:definition "An obsoletion change in which information from the obsoleted node is selectively copied to a single target, and edges can automatically be rewired to point to the target node" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeObsoletionWithNoDirectReplacement a owl:Class ;
rdfs:label "NodeObsoletionWithNoDirectReplacement" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 1 ;
owl:onProperty kgcl:has_nondirect_replacement ],
[ a owl:Restriction ;
owl:allValuesFrom owl:Thing ;
owl:onProperty kgcl:has_nondirect_replacement ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeObsoletion ;
skos:definition "An obsoletion change in which there is no direct replacement" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeRename a owl:Class ;
rdfs:label "NodeRename" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_language ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:has_textual_diff ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:new_language ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:old_language ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom kgcl:TextualDiff ;
owl:onProperty kgcl:has_textual_diff ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_value ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:new_language ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:old_value ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:old_language ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:old_language ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:has_textual_diff ],
kgcl:NodeChange ;
skos:definition "A node change where the name (aka rdfs:label) of the node changes" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeShallowing a owl:Class ;
rdfs:label "NodeShallowing" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeMove ;
skos:definition "The opposite of node deepening" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:NodeUnobsoletion a owl:Class ;
rdfs:label "NodeUnobsoletion" ;
rdfs:seeAlso <http://wiki.geneontology.org/index.php/Restoring_an_Obsolete_Ontology_Term> ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty kgcl:has_nondirect_replacement ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:onProperty linkml:mixins ;
owl:someValuesFrom kgcl:Unobsoletion ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:has_nondirect_replacement ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:has_direct_replacement ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty kgcl:has_direct_replacement ],
kgcl:NodeChange ;
skos:altLabel "class unobsoletion",
"concept unobsoletion",
"node undeprecation",
"term unobsoletion" ;
skos:definition "unobsoletion of a node deprecates usage of that node. Rarely applied." ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:ObjectPropertyCreation a owl:Class ;
rdfs:label "ObjectPropertyCreation" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
kgcl:NodeCreation ;
skos:definition "A node creation where the owl type is 'ObjectProperty'" ;
skos:inScheme <https://w3id.org/kgcl> .
<http://w3id.org/kgcl/ObsoletionPolicyEnum#NoLogicalAxiomsOnObsoletes> a owl:Class ;
rdfs:label "NoLogicalAxiomsOnObsoletes" ;
rdfs:subClassOf kgcl:ObsoletionPolicyEnum,
linkml:PermissibleValue .
<http://w3id.org/kgcl/ObsoletionPolicyEnum#ObsoleteLabelsArePrefixed> a owl:Class ;
rdfs:label "ObsoleteLabelsArePrefixed" ;
rdfs:subClassOf kgcl:ObsoletionPolicyEnum,
linkml:PermissibleValue .
kgcl:PlaceUnder a owl:Class ;
rdfs:label "PlaceUnder" ;
rdfs:subClassOf kgcl:EdgeCreation ;
skos:definition "An edge creation where the predicate is owl:subClassOf" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:PredicateChange a owl:Class ;
rdfs:label "PredicateChange" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty kgcl:change_description ],
[ a owl:Restriction ;
owl:allValuesFrom xsd:string ;
owl:onProperty kgcl:change_description ],
kgcl:EdgeChange ;
skos:definition "An edge change where the predicate (relationship type) is modified." ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:RemoveFromSubset a owl:Class ;
rdfs:label "RemoveFromSubset" ;
rdfs:subClassOf kgcl:SubsetMembershipChange ;
skos:definition "removing an element from a subset" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:RemoveMapping a owl:Class ;
rdfs:label "RemoveMapping" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
kgcl:NodeMappingChange ;
skos:definition "A node mapping change where a mapping is deleted" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:RemoveMetadataAssertion a owl:Class ;
rdfs:label "RemoveMetadataAssertion" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
[ a owl:Restriction ;
owl:allValuesFrom <http://w3id.org/kgcl/om/Node> ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:minCardinality 0 ;
owl:onProperty <http://w3id.org/kgcl/om/predicate> ],
[ a owl:Restriction ;
owl:maxCardinality 1 ;
owl:onProperty <http://w3id.org/kgcl/om/object> ],
kgcl:NodeMetadataAssertionChange ;
skos:definition "A node metadata assertion change where a metadata assertion is deleted" ;
skos:inScheme <https://w3id.org/kgcl> .
kgcl:RemoveNodeFromSubset a owl:Class ;
rdfs:label "RemoveNodeFromSubset" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom owl:Thing ;