Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Preset for PacBio CCS? #2

Open
armintoepfer opened this issue Apr 29, 2019 · 1 comment
Open

Preset for PacBio CCS? #2

armintoepfer opened this issue Apr 29, 2019 · 1 comment
Labels
question Further information is requested

Comments

@armintoepfer
Copy link

Hi!

Do you have parameter recommendations for long accurate reads such as HiFi PacBio reads of ~15kb >Q20?

Thank you,
Armin
@MarkusRainerSchmidt
Copy link
Member

Hello,

Currently, we do not have a special setting for HiFi PacBio. Please use the PacBio presetting as fallback until we have fixed this issue. However, special settings for HiFi PacBio are only expected to deliver improved runtimes. We do not expect improvements with respect to accuracy.
We will look into this matter shortly.

Best wishes,
Arne and Markus

@MarkusRainerSchmidt MarkusRainerSchmidt added the question Further information is requested label Apr 29, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
question Further information is requested
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@armintoepfer @MarkusRainerSchmidt