M1-12 Support MAP-Core for simulations on the Portal

[elisabettai]

Launch simulations from the Portal (in support of the leading MAP-Core):
Create a Schema and API that exposes metadata describing the input and output ports of computational studies and enables MAP-Core to automatically generate a Portal GUI for configuring and launching computational studies, and recovering results. This functionality shall not be limited to CellML models.

Deliverable: o²S²PARC API functionality & port meta-data required for MAP-Core to implement the Portal-based simulation configuration and launching + timely documentation of API.

Deadline: Month 4
Wrike M2.1.3

Related MAP-Core milestone: M4.4 SIM API support.

[elisabettai]

@pcrespov, I guess this is continuation of the work you have been doing in supporting MAP-Core.

[elisabettai]

Hi @pcrespov, as far as I understand this is completed, right? Could you also check the linked Wrike ticket in the description to see if there's something missing?

[pcrespov]

@elisabettai no, this is not completed yet (the case extends 4 quarters). As you add above, this is a continuation of the work we have been doing with MAP-Core.

The idea is around extending osparc API to expose json-schemas of solvers input/outputs. Once we have this, then MAP-Core could automatically generate the GUI's in the sparc portal.

The link to the ticket and the information is correct. The case mentions to "Quarterly reporting on new SIM APIs used by the MAP Portal widgets."

For Q1, the first version of the MAP Portal widgets were completed and they used files, jobs and solvers resources from the osparc API

[elisabettai]

Thanks for the clarification @pcrespov. I've then added this to related Epic (together with some other tickets that were not linked yet there). Let me know if something there is not clear.

[pcrespov]

Goal for sprint Athena

• Convert published studies in osparc.io to latest cMIS #769
• report outcome of API with MAP-Core (for his Quarterly report)

Review demo

• report outcome from cMIS?

[pcrespov]

Update on sprint Athena

Ongoing

• Periodic report outcome of API with MAP-Core (next week)

Open

• Convert published studies in osparc.io to latest cMIS #769

[pcrespov]

Update on sprint Zefram Cochrane

Ongoing

• Periodic report outcome of API with MAP-Core (next meeting on Tue/Wed. Jan17)
  • will demo studies ports API and discuss about possible libraries for the clients (e.g. json-forms etc)
• Convert published studies in osparc.io to latest cMIS #769

[pcrespov]

Goal for sprint Mithril

• Convert published studies in osparc.io to latest cMIS #769 @elisabettai
• report outcome of API with MAP-Core (for his Quarterly report) @pcrespov

[pcrespov]

Goal for sprint Jelly Beans

• Convert published studies in osparc.io to latest cMIS #769 @elisabettai
• report outcome of API with MAP-Core (for his Quarterly report) @pcrespov

[pcrespov]

Goal for sprint Pastel de Nata

• report outcome of API with MAP-Core (for his Quarterly report) on May 16, 2023 @pcrespov

[elisabettai]

Update for sprint Pastel de Nata

• Three of our datasets on the SPARC Portal have been updated and support launching an oSPARC study or using the MAP-Core Simulation viewer. These datasets can be accessed here:
  https://sparc.science/datasets/308?type=simulation (Multi-scale human cardiac electrophysiology models)
  https://sparc.science/datasets/318?type=simulation (Multi-scale rabbit cardiac electrophysiology models)
  https://sparc.science/datasets/320?type=simulation (Kember Cardiac Nerve Model)
• Those three datasets have been re-published and follow the latest version of SDS (see Convert published studies in osparc.io to latest cMIS #769)
• Meeting Alan (MAP-Core) and @pcrespov (SIM-Core) on May 16, 2023 and preparation of Quarterly report. SEE details in M4.4 SIM API support.

[elisabettai]

@pcrespov, I changed the name of this milestone to M1-12... to it's clear that is ongoing.
I put as deadline mid of August, when I assume you'll sync with MAP ahead of the quarterly reports.

[pcrespov]

Update for sprint Baklava

• Meeting between @pcrespov and Alan on Tuesday Aug. 22 for Q4 report.
• reported Q4 M4.4 SIM API support

This concludes this issue.

[elisabettai]

@pcrespov, I'll close this then. 😉