DESCRIPTION

Package: MERINGUE
Title: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities
Version: 1.0
Authors@R: person("Jean", "Fan", 
	email = "jeanfan@jhu.edu", role = c("aut", "cre"),
	comment = c(ORCID = "0000-0002-0212-5451"))
Description: MERINGUE is a computational framework based on spatial auto-correlation and cross-correlation analysis to identify genes with spatially heterogeneous expression patterns, derive putative cell-cell communication, and perform spatially informed cell clustering in 2D and 3D in a density-agnostic manner using spatially resolved transcriptomics data. 
Depends: R (>= 3.0.0)
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
Imports:
    RANN,
    Matrix,
    akima,
    Rcpp,
    dynamicTreeCut,
    geometry,
    DT,
    igraph,
    mgcv,
    clue
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
RoxygenNote: 7.1.1
Suggests: 
    knitr,
    markdown,
    rmarkdown,
    testthat,
    rcmdcheck,
    shiny,
    Rtsne,
    uwot,
    rgl
VignetteBuilder: knitr