1.5.0-DEV-86ee57cdd7.log

Julia Version 1.5.0-DEV.689
Commit 86ee57cdd7 (2020-04-25 20:17 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
  Installed OpenSpecFun_jll ────────────── v0.5.3+3
  Installed DiffResults ────────────────── v1.0.2
  Installed ArrayInterface ─────────────── v2.8.5
  Installed ExponentialUtilities ───────── v1.6.0
  Installed Tracker ────────────────────── v0.2.6
  Installed DiffRules ──────────────────── v1.0.1
  Installed DiffEqSensitivity ──────────── v6.13.0
  Installed SparseDiffTools ────────────── v1.6.0
  Installed FFTW_jll ───────────────────── v3.3.9+5
  Installed Rmath ──────────────────────── v0.6.1
  Installed CompilerSupportLibraries_jll ─ v0.3.3+0
  Installed SortingAlgorithms ──────────── v0.3.1
  Installed SpecialFunctions ───────────── v0.10.0
  Installed LineSearches ───────────────── v7.0.1
  Installed ArnoldiMethod ──────────────── v0.0.4
  Installed UnPack ─────────────────────── v0.1.0
  Installed Missings ───────────────────── v0.4.3
  Installed ProgressLogging ────────────── v0.1.2
  Installed AbstractFFTs ───────────────── v0.5.0
  Installed FunctionWrappers ───────────── v1.1.1
  Installed ForwardDiff ────────────────── v0.10.10
  Installed NLSolversBase ──────────────── v7.6.1
  Installed Zygote ─────────────────────── v0.4.17
  Installed Roots ──────────────────────── v1.0.1
  Installed LightGraphs ────────────────── v1.3.2
  Installed OpenBLAS_jll ───────────────── v0.3.9+2
  Installed Inflate ────────────────────── v0.1.2
  Installed BinaryProvider ─────────────── v0.5.8
  Installed DocStringExtensions ────────── v0.8.1
  Installed StaticArrays ───────────────── v0.12.2
  Installed DiffEqBase ─────────────────── v6.30.2
  Installed IterativeSolvers ───────────── v0.8.4
  Installed Distributions ──────────────── v0.23.2
  Installed RecursiveFactorization ─────── v0.1.0
  Installed DataAPI ────────────────────── v1.2.0
  Installed TerminalLoggers ────────────── v0.1.1
  Installed ConsoleProgressMonitor ─────── v0.1.2
  Installed ProgressMeter ──────────────── v1.2.0
  Installed NaNMath ────────────────────── v0.3.3
  Installed AbstractTrees ──────────────── v0.3.3
  Installed NLsolve ────────────────────── v4.3.0
  Installed DataStructures ─────────────── v0.17.13
  Installed NNlib ──────────────────────── v0.6.6
  Installed CommonSubexpressions ───────── v0.2.0
  Installed MuladdMacro ────────────────── v0.2.2
  Installed Requires ───────────────────── v1.0.1
  Installed RecursiveArrayTools ────────── v2.3.1
  Installed ZygoteRules ────────────────── v0.2.0
  Installed SimpleTraits ───────────────── v0.9.2
  Installed PDMats ─────────────────────── v0.9.12
  Installed ArrayLayouts ───────────────── v0.2.4
  Installed StatsBase ──────────────────── v0.33.0
  Installed VertexSafeGraphs ───────────── v0.1.1
  Installed StatsFuns ──────────────────── v0.9.4
  Installed GenericSVD ─────────────────── v0.3.0
  Installed LoggingExtras ──────────────── v0.4.0
  Installed Distances ──────────────────── v0.8.2
  Installed TableTraits ────────────────── v1.0.0
  Installed Parameters ─────────────────── v0.12.0
  Installed MacroTools ─────────────────── v0.5.5
  Installed Rmath_jll ──────────────────── v0.2.2+0
  Installed ReverseDiff ────────────────── v1.2.0
  Installed OrdinaryDiffEq ─────────────── v5.35.0
  Installed Adapt ──────────────────────── v1.0.1
  Installed OrderedCollections ─────────── v1.1.0
  Installed Compat ─────────────────────── v3.8.0
  Installed LeftChildRightSiblingTrees ─── v0.1.2
  Installed TreeViews ──────────────────── v0.3.0
  Installed LabelledArrays ─────────────── v1.1.0
  Installed Reexport ───────────────────── v0.2.0
  Installed Arpack ─────────────────────── v0.4.0
  Installed FFTW ───────────────────────── v1.2.0
  Installed MKL_jll ────────────────────── v2019.0.117+2
  Installed RecipesBase ────────────────── v1.0.1
  Installed FillArrays ─────────────────── v0.8.7
  Installed IntelOpenMP_jll ────────────── v2018.0.3+0
  Installed IteratorInterfaceExtensions ── v1.0.0
  Installed DiffEqCallbacks ────────────── v2.13.0
  Installed IRTools ────────────────────── v0.3.2
  Installed ChainRulesCore ─────────────── v0.7.5
  Installed QuadGK ─────────────────────── v2.3.1
  Installed QuasiMonteCarlo ────────────── v0.2.0
  Installed Arpack_jll ─────────────────── v3.5.0+3
  Installed FiniteDiff ─────────────────── v2.3.0
  Installed LatinHypercubeSampling ─────── v1.6.4
  Installed Sobol ──────────────────────── v1.3.0
Updating `~/.julia/environments/v1.5/Project.toml`
  [41bf760c] + DiffEqSensitivity v6.13.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
  [621f4979] + AbstractFFTs v0.5.0
  [1520ce14] + AbstractTrees v0.3.3
  [79e6a3ab] + Adapt v1.0.1
  [ec485272] + ArnoldiMethod v0.0.4
  [7d9fca2a] + Arpack v0.4.0
  [68821587] + Arpack_jll v3.5.0+3
  [4fba245c] + ArrayInterface v2.8.5
  [4c555306] + ArrayLayouts v0.2.4
  [b99e7846] + BinaryProvider v0.5.8
  [d360d2e6] + ChainRulesCore v0.7.5
  [bbf7d656] + CommonSubexpressions v0.2.0
  [34da2185] + Compat v3.8.0
  [e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [9a962f9c] + DataAPI v1.2.0
  [864edb3b] + DataStructures v0.17.13
  [2b5f629d] + DiffEqBase v6.30.2
  [459566f4] + DiffEqCallbacks v2.13.0
  [41bf760c] + DiffEqSensitivity v6.13.0
  [163ba53b] + DiffResults v1.0.2
  [b552c78f] + DiffRules v1.0.1
  [b4f34e82] + Distances v0.8.2
  [31c24e10] + Distributions v0.23.2
  [ffbed154] + DocStringExtensions v0.8.1
  [d4d017d3] + ExponentialUtilities v1.6.0
  [7a1cc6ca] + FFTW v1.2.0
  [f5851436] + FFTW_jll v3.3.9+5
  [1a297f60] + FillArrays v0.8.7
  [6a86dc24] + FiniteDiff v2.3.0
  [f6369f11] + ForwardDiff v0.10.10
  [069b7b12] + FunctionWrappers v1.1.1
  [01680d73] + GenericSVD v0.3.0
  [7869d1d1] + IRTools v0.3.2
  [d25df0c9] + Inflate v0.1.2
  [1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
  [42fd0dbc] + IterativeSolvers v0.8.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [2ee39098] + LabelledArrays v1.1.0
  [a5e1c1ea] + LatinHypercubeSampling v1.6.4
  [1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
  [093fc24a] + LightGraphs v1.3.2
  [d3d80556] + LineSearches v7.0.1
  [e6f89c97] + LoggingExtras v0.4.0
  [856f044c] + MKL_jll v2019.0.117+2
  [1914dd2f] + MacroTools v0.5.5
  [e1d29d7a] + Missings v0.4.3
  [46d2c3a1] + MuladdMacro v0.2.2
  [d41bc354] + NLSolversBase v7.6.1
  [2774e3e8] + NLsolve v4.3.0
  [872c559c] + NNlib v0.6.6
  [77ba4419] + NaNMath v0.3.3
  [4536629a] + OpenBLAS_jll v0.3.9+2
  [efe28fd5] + OpenSpecFun_jll v0.5.3+3
  [bac558e1] + OrderedCollections v1.1.0
  [1dea7af3] + OrdinaryDiffEq v5.35.0
  [90014a1f] + PDMats v0.9.12
  [d96e819e] + Parameters v0.12.0
  [33c8b6b6] + ProgressLogging v0.1.2
  [92933f4c] + ProgressMeter v1.2.0
  [1fd47b50] + QuadGK v2.3.1
  [8a4e6c94] + QuasiMonteCarlo v0.2.0
  [3cdcf5f2] + RecipesBase v1.0.1
  [731186ca] + RecursiveArrayTools v2.3.1
  [f2c3362d] + RecursiveFactorization v0.1.0
  [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v1.0.1
  [37e2e3b7] + ReverseDiff v1.2.0
  [79098fc4] + Rmath v0.6.1
  [f50d1b31] + Rmath_jll v0.2.2+0
  [f2b01f46] + Roots v1.0.1
  [699a6c99] + SimpleTraits v0.9.2
  [ed01d8cd] + Sobol v1.3.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [47a9eef4] + SparseDiffTools v1.6.0
  [276daf66] + SpecialFunctions v0.10.0
  [90137ffa] + StaticArrays v0.12.2
  [2913bbd2] + StatsBase v0.33.0
  [4c63d2b9] + StatsFuns v0.9.4
  [3783bdb8] + TableTraits v1.0.0
  [5d786b92] + TerminalLoggers v0.1.1
  [9f7883ad] + Tracker v0.2.6
  [a2a6695c] + TreeViews v0.3.0
  [3a884ed6] + UnPack v0.1.0
  [19fa3120] + VertexSafeGraphs v0.1.1
  [e88e6eb3] + Zygote v0.4.17
  [700de1a5] + ZygoteRules v0.2.0
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [4607b0f0] + SuiteSparse
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
   Building NNlib → `~/.julia/packages/NNlib/FAI3o/deps/build.log`
   Building FFTW ─→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
    Testing DiffEqSensitivity
Status `/tmp/jl_vBcasU/Project.toml`
  [79e6a3ab] Adapt v1.0.1
  [49dc2e85] Calculus v0.5.1
  [2b5f629d] DiffEqBase v6.30.2
  [459566f4] DiffEqCallbacks v2.13.0
  [41bf760c] DiffEqSensitivity v6.13.0
  [31c24e10] Distributions v0.23.2
  [7a1cc6ca] FFTW v1.2.0
  [6a86dc24] FiniteDiff v2.3.0
  [f6369f11] ForwardDiff v0.10.10
  [1dea7af3] OrdinaryDiffEq v5.35.0
  [d96e819e] Parameters v0.12.0
  [1fd47b50] QuadGK v2.3.1
  [8a4e6c94] QuasiMonteCarlo v0.2.0
  [731186ca] RecursiveArrayTools v2.3.1
  [37e2e3b7] ReverseDiff v1.2.0
  [1bc83da4] SafeTestsets v0.0.1
  [9f7883ad] Tracker v0.2.6
  [e88e6eb3] Zygote v0.4.17
  [700de1a5] ZygoteRules v0.2.0
  [37e2e46d] LinearAlgebra
  [44cfe95a] Pkg
  [9a3f8284] Random
  [10745b16] Statistics
  [8dfed614] Test
Status `/tmp/jl_vBcasU/Manifest.toml`
  [621f4979] AbstractFFTs v0.5.0
  [1520ce14] AbstractTrees v0.3.3
  [79e6a3ab] Adapt v1.0.1
  [ec485272] ArnoldiMethod v0.0.4
  [7d9fca2a] Arpack v0.4.0
  [68821587] Arpack_jll v3.5.0+3
  [4fba245c] ArrayInterface v2.8.5
  [4c555306] ArrayLayouts v0.2.4
  [b99e7846] BinaryProvider v0.5.8
  [49dc2e85] Calculus v0.5.1
  [d360d2e6] ChainRulesCore v0.7.5
  [bbf7d656] CommonSubexpressions v0.2.0
  [34da2185] Compat v3.8.0
  [e66e0078] CompilerSupportLibraries_jll v0.3.3+0
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [9a962f9c] DataAPI v1.2.0
  [864edb3b] DataStructures v0.17.13
  [2b5f629d] DiffEqBase v6.30.2
  [459566f4] DiffEqCallbacks v2.13.0
  [41bf760c] DiffEqSensitivity v6.13.0
  [163ba53b] DiffResults v1.0.2
  [b552c78f] DiffRules v1.0.1
  [b4f34e82] Distances v0.8.2
  [31c24e10] Distributions v0.23.2
  [ffbed154] DocStringExtensions v0.8.1
  [d4d017d3] ExponentialUtilities v1.6.0
  [7a1cc6ca] FFTW v1.2.0
  [f5851436] FFTW_jll v3.3.9+5
  [1a297f60] FillArrays v0.8.7
  [6a86dc24] FiniteDiff v2.3.0
  [f6369f11] ForwardDiff v0.10.10
  [069b7b12] FunctionWrappers v1.1.1
  [01680d73] GenericSVD v0.3.0
  [7869d1d1] IRTools v0.3.2
  [d25df0c9] Inflate v0.1.2
  [1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
  [42fd0dbc] IterativeSolvers v0.8.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [2ee39098] LabelledArrays v1.1.0
  [a5e1c1ea] LatinHypercubeSampling v1.6.4
  [1d6d02ad] LeftChildRightSiblingTrees v0.1.2
  [093fc24a] LightGraphs v1.3.2
  [d3d80556] LineSearches v7.0.1
  [e6f89c97] LoggingExtras v0.4.0
  [856f044c] MKL_jll v2019.0.117+2
  [1914dd2f] MacroTools v0.5.5
  [e1d29d7a] Missings v0.4.3
  [46d2c3a1] MuladdMacro v0.2.2
  [d41bc354] NLSolversBase v7.6.1
  [2774e3e8] NLsolve v4.3.0
  [872c559c] NNlib v0.6.6
  [77ba4419] NaNMath v0.3.3
  [4536629a] OpenBLAS_jll v0.3.9+2
  [efe28fd5] OpenSpecFun_jll v0.5.3+3
  [bac558e1] OrderedCollections v1.1.0
  [1dea7af3] OrdinaryDiffEq v5.35.0
  [90014a1f] PDMats v0.9.12
  [d96e819e] Parameters v0.12.0
  [33c8b6b6] ProgressLogging v0.1.2
  [92933f4c] ProgressMeter v1.2.0
  [1fd47b50] QuadGK v2.3.1
  [8a4e6c94] QuasiMonteCarlo v0.2.0
  [3cdcf5f2] RecipesBase v1.0.1
  [731186ca] RecursiveArrayTools v2.3.1
  [f2c3362d] RecursiveFactorization v0.1.0
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.0.1
  [37e2e3b7] ReverseDiff v1.2.0
  [79098fc4] Rmath v0.6.1
  [f50d1b31] Rmath_jll v0.2.2+0
  [f2b01f46] Roots v1.0.1
  [1bc83da4] SafeTestsets v0.0.1
  [699a6c99] SimpleTraits v0.9.2
  [ed01d8cd] Sobol v1.3.0
  [a2af1166] SortingAlgorithms v0.3.1
  [47a9eef4] SparseDiffTools v1.6.0
  [276daf66] SpecialFunctions v0.10.0
  [90137ffa] StaticArrays v0.12.2
  [2913bbd2] StatsBase v0.33.0
  [4c63d2b9] StatsFuns v0.9.4
  [3783bdb8] TableTraits v1.0.0
  [5d786b92] TerminalLoggers v0.1.1
  [9f7883ad] Tracker v0.2.6
  [a2a6695c] TreeViews v0.3.0
  [3a884ed6] UnPack v0.1.0
  [19fa3120] VertexSafeGraphs v0.1.1
  [e88e6eb3] Zygote v0.4.17
  [700de1a5] ZygoteRules v0.2.0
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [b77e0a4c] InteractiveUtils
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [44cfe95a] Pkg
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [4607b0f0] SuiteSparse
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
WARNING: could not import Compiler.just_construct_ssa into Wrap
Test Summary:       | Pass  Broken  Total
Forward Sensitivity |   23       1     24
147.873681 seconds (200.64 M allocations: 9.880 GiB, 5.83% gc time)
Calculate discrete adjoint sensitivities
OOP adjoint sensitivities 
┌ Warning: Assignment to `easy_res22` in soft scope is ambiguous because a global variable by the same name exists: `easy_res22` will be treated as a new local. Disambiguate by using `local easy_res22` to suppress this warning or `global easy_res22` to assign to the existing global variable.
└ @ ~/.julia/packages/DiffEqSensitivity/ykcWV/test/adjoint.jl:135
┌ Warning: Assignment to `easy_res32` in soft scope is ambiguous because a global variable by the same name exists: `easy_res32` will be treated as a new local. Disambiguate by using `local easy_res32` to suppress this warning or `global easy_res32` to assign to the existing global variable.
└ @ ~/.julia/packages/DiffEqSensitivity/ykcWV/test/adjoint.jl:144
┌ Warning: Assignment to `easy_res42` in soft scope is ambiguous because a global variable by the same name exists: `easy_res42` will be treated as a new local. Disambiguate by using `local easy_res42` to suppress this warning or `global easy_res42` to assign to the existing global variable.
└ @ ~/.julia/packages/DiffEqSensitivity/ykcWV/test/adjoint.jl:150
┌ Warning: Assignment to `easy_res62` in soft scope is ambiguous because a global variable by the same name exists: `easy_res62` will be treated as a new local. Disambiguate by using `local easy_res62` to suppress this warning or `global easy_res62` to assign to the existing global variable.
└ @ ~/.julia/packages/DiffEqSensitivity/ykcWV/test/adjoint.jl:161
Calculate adjoint sensitivities 
Calculate adjoint sensitivities from autodiff & numerical diff
Adjoints of u0
Do a continuous adjoint problem
Test the `adjoint_sensitivities` utility function
2
23
25
27
3
33
35
37
Calculate adjoint sensitivities from autodiff & numerical diff
[ Info: discrete cost
[ Info: continuous cost
┌ Warning: `BacksolveAdjoint` is likely to fail on semi-explicit DAEs, if memory is a concern, please consider using InterpolatingAdjoint(checkpoint=true) instead.
└ @ DiffEqSensitivity ~/.julia/packages/DiffEqSensitivity/ykcWV/src/local_sensitivity/backsolve_adjoint.jl:70
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/l2Rq2/src/integrator_interface.jl:343
┌ Warning: `BacksolveAdjoint` is likely to fail on semi-explicit DAEs, if memory is a concern, please consider using InterpolatingAdjoint(checkpoint=true) instead.
└ @ DiffEqSensitivity ~/.julia/packages/DiffEqSensitivity/ykcWV/src/local_sensitivity/backsolve_adjoint.jl:70
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/l2Rq2/src/integrator_interface.jl:343
┌ Warning: `BacksolveAdjoint` is likely to fail on semi-explicit DAEs, if memory is a concern, please consider using InterpolatingAdjoint(checkpoint=true) instead.
└ @ DiffEqSensitivity ~/.julia/packages/DiffEqSensitivity/ykcWV/src/local_sensitivity/backsolve_adjoint.jl:70
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/l2Rq2/src/integrator_interface.jl:343
┌ Warning: `BacksolveAdjoint` is likely to fail on semi-explicit DAEs, if memory is a concern, please consider using InterpolatingAdjoint(checkpoint=true) instead.
└ @ DiffEqSensitivity ~/.julia/packages/DiffEqSensitivity/ykcWV/src/local_sensitivity/backsolve_adjoint.jl:70
┌ Warning: dt <= dtmin. Aborting. There is either an error in your model specification or the true solution is unstable.
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/l2Rq2/src/integrator_interface.jl:343
Test Summary:       | Pass  Broken  Total
Adjoint Sensitivity |  110      11    121
1239.608326 seconds (1.34 G allocations: 67.787 GiB, 4.43% gc time)
Test Summary:            | Pass  Total
Second Order Sensitivity |    2      2
287.656119 seconds (263.62 M allocations: 11.077 GiB, 5.23% gc time)
Test Summary:              | Pass  Broken  Total
Concrete Solve Derivatives |   32       5     37
246.559951 seconds (233.50 M allocations: 11.045 GiB, 6.43% gc time)
Test Summary: | Pass  Total
Morris Method |   23     23
498.621142 seconds (1.34 G allocations: 100.328 GiB, 16.10% gc time)
Test Summary: | Pass  Total
Sobol Method  |   16     16
 33.236227 seconds (30.06 M allocations: 5.277 GiB, 10.35% gc time)
Test Summary: | Pass  Total
DGSM Method   |   16     16
 91.720394 seconds (445.94 M allocations: 13.294 GiB, 10.34% gc time)
Test Summary: | Pass  Total
eFAST Method  |   12     12
 24.620391 seconds (19.67 M allocations: 1.314 GiB, 3.42% gc time)
Test Summary:        | Pass  Total
RegressionGSA Method |   29     29
 13.220573 seconds (8.98 M allocations: 440.179 MiB)
2583.201293 seconds (3.88 G allocations: 220.433 GiB, 7.30% gc time)
    Testing DiffEqSensitivity tests passed