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1.5.0-DEV-86ee57cdd7.log
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Julia Version 1.5.0-DEV.689
Commit 86ee57cdd7 (2020-04-25 20:17 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed SortingAlgorithms ──────────── v0.3.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DiffResults ────────────────── v1.0.2
Installed Rmath ──────────────────────── v0.6.1
Installed SpecialFunctions ───────────── v0.10.0
Installed DiffRules ──────────────────── v1.0.1
Installed Stheno ─────────────────────── v0.6.3
Installed Missings ───────────────────── v0.4.3
Installed ForwardDiff ────────────────── v0.10.10
Installed OpenBLAS_jll ───────────────── v0.3.9+2
Installed AbstractFFTs ───────────────── v0.5.0
Installed BinaryProvider ─────────────── v0.5.8
Installed Zygote ─────────────────────── v0.4.17
Installed StaticArrays ───────────────── v0.12.2
Installed DataAPI ────────────────────── v1.2.0
Installed Distributions ──────────────── v0.23.2
Installed NaNMath ────────────────────── v0.3.3
Installed CommonSubexpressions ───────── v0.2.0
Installed Requires ───────────────────── v1.0.1
Installed NNlib ──────────────────────── v0.6.6
Installed DataStructures ─────────────── v0.17.13
Installed StatsBase ──────────────────── v0.33.0
Installed PDMats ─────────────────────── v0.9.12
Installed ArrayLayouts ───────────────── v0.2.4
Installed ZygoteRules ────────────────── v0.2.0
Installed StatsFuns ──────────────────── v0.9.4
Installed Distances ──────────────────── v0.8.2
Installed MacroTools ─────────────────── v0.5.5
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed Arpack ─────────────────────── v0.4.0
Installed OrderedCollections ─────────── v1.1.0
Installed RecipesBase ────────────────── v0.8.0
Installed FillArrays ─────────────────── v0.8.7
Installed QuadGK ─────────────────────── v2.3.1
Installed IRTools ────────────────────── v0.3.2
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed BlockArrays ────────────────── v0.10.2
Updating `~/.julia/environments/v1.5/Project.toml`
[8188c328] + Stheno v0.6.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4c555306] + ArrayLayouts v0.2.4
[b99e7846] + BinaryProvider v0.5.8
[8e7c35d0] + BlockArrays v0.10.2
[bbf7d656] + CommonSubexpressions v0.2.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.2.0
[864edb3b] + DataStructures v0.17.13
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.23.2
[1a297f60] + FillArrays v0.8.7
[f6369f11] + ForwardDiff v0.10.10
[7869d1d1] + IRTools v0.3.2
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[872c559c] + NNlib v0.6.6
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.9+2
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.12
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.8.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.0
[90137ffa] + StaticArrays v0.12.2
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.4
[8188c328] + Stheno v0.6.3
[e88e6eb3] + Zygote v0.4.17
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building NNlib → `~/.julia/packages/NNlib/FAI3o/deps/build.log`
Testing Stheno
Status `/tmp/jl_HewYH0/Project.toml`
[8e7c35d0] BlockArrays v0.10.2
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.23.2
[e30172f5] Documenter v0.24.10
[1a297f60] FillArrays v0.8.7
[26cc04aa] FiniteDifferences v0.9.8
[587475ba] Flux v0.10.4
[1914dd2f] MacroTools v0.5.5
[3cdcf5f2] RecipesBase v0.8.0
[ae029012] Requires v1.0.1
[8188c328] Stheno v0.6.3
[a759f4b9] TimerOutputs v0.5.5
[e88e6eb3] Zygote v0.4.17
[700de1a5] ZygoteRules v0.2.0
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_HewYH0/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v1.0.1
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4c555306] ArrayLayouts v0.2.4
[b99e7846] BinaryProvider v0.5.8
[8e7c35d0] BlockArrays v0.10.2
[fa961155] CEnum v0.2.0
[3895d2a7] CUDAapi v4.0.0
[c5f51814] CUDAdrv v6.2.3
[be33ccc6] CUDAnative v3.0.4
[da1fd8a2] CodeTracking v0.5.9
[944b1d66] CodecZlib v0.7.0
[3da002f7] ColorTypes v0.10.2
[5ae59095] Colors v0.12.0
[bbf7d656] CommonSubexpressions v0.2.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[f68482b8] Cthulhu v1.0.2
[3a865a2d] CuArrays v2.1.0
[9a962f9c] DataAPI v1.2.0
[864edb3b] DataStructures v0.17.13
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.23.2
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.10
[e2ba6199] ExprTools v0.1.1
[1a297f60] FillArrays v0.8.7
[26cc04aa] FiniteDifferences v0.9.8
[53c48c17] FixedPointNumbers v0.8.0
[587475ba] Flux v0.10.4
[f6369f11] ForwardDiff v0.10.10
[0c68f7d7] GPUArrays v3.2.0
[7869d1d1] IRTools v0.3.2
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.8.1
[929cbde3] LLVM v1.3.4
[1914dd2f] MacroTools v0.5.5
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[872c559c] NNlib v0.6.6
[77ba4419] NaNMath v0.3.3
[4536629a] OpenBLAS_jll v0.3.9+2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.12
[69de0a69] Parsers v1.0.2
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v0.8.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.2
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.4
[8188c328] Stheno v0.6.3
[a759f4b9] TimerOutputs v0.5.5
[3bb67fe8] TranscodingStreams v0.9.5
[a5390f91] ZipFile v0.9.1
[83775a58] Zlib_jll v1.2.11+9
[e88e6eb3] Zygote v0.4.17
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
WARNING: could not import Compiler.just_construct_ssa into Wrap
┌ Warning: Assignment to `#s277` in soft scope is ambiguous because a global variable by the same name exists: `#s277` will be treated as a new local. Disambiguate by using `local #s277` to suppress this warning or `global #s277` to assign to the existing global variable.
└ @ ~/.julia/packages/Stheno/uuG6N/src/util/distances.jl:2
util:
Pairwise when X ≈ Y: Test Failed at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/test_util.jl:90
Expression: fd_isapprox(adj_ad, adj_fd, rtol, atol)
Stacktrace:
[1] adjoint_test(::Function, ::Array{Float64,2}, ::Array{Float64,2}, ::Vararg{Array{Float64,2},N} where N; rtol::Float64, atol::Float64, fdm::FiniteDifferences.Forward{UnitRange{Int64},Array{Float64,1}}, print_results::Bool) at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/test_util.jl:90
[2] top-level scope at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/util/zygote_rules.jl:63
[3] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[4] top-level scope at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/util/zygote_rules.jl:60
[5] top-level scope at /home/pkgeval/.julia/packages/TimerOutputs/NvIUx/src/TimerOutput.jl:229
[6] top-level scope at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/util/zygote_rules.jl:59
[7] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[8] top-level scope at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/util/zygote_rules.jl:5
[9] top-level scope at /home/pkgeval/.julia/packages/TimerOutputs/NvIUx/src/TimerOutput.jl:229
gp:
composite:
abstract_gp:
flux:
doctests
[ Info: SetupBuildDirectory: setting up build directory.
[ Info: Doctest: running doctests.
[ Info: Skipped ExpandTemplates step (doctest only).
[ Info: Skipped CrossReferences step (doctest only).
[ Info: Skipped CheckDocument step (doctest only).
[ Info: Skipped Populate step (doctest only).
[ Info: Skipped RenderDocument step (doctest only).
Test Summary: | Pass Fail Broken Total
Stheno | 2634 1 4 2639
util | 303 1 4 308
zygote_rules | 28 1 29
Cholesky (getproperty) | 11 11
colwise(::Euclidean, X, Y; dims=2) | 2 2
pairwise(::Euclidean, X, Y; dims=2) | 2 2
pairwise(::Euclidean, X; dims=2) | 2 2
Diagonal | 4 4
broadcast | 4 4
Pairwise when X ≈ Y | 1 1 2
ldiv(::Diagonal, ::Matrix) | 2 2
cholesky | 33 33
block_arrays | 148 4 152
abstract_data_set | 38 38
distances | 56 56
gp | 1546 1546
composite | 664 664
abstract_gp | 54 54
flux | 66 66
doctests | 1 1
ERROR: LoadError: Some tests did not pass: 2634 passed, 1 failed, 0 errored, 4 broken.
in expression starting at /home/pkgeval/.julia/packages/Stheno/uuG6N/test/runtests.jl:15
ERROR: Package Stheno errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1515
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16