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Crash of servedocs #185

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jd-foster opened this issue Sep 20, 2024 · 2 comments
Closed

Crash of servedocs #185

jd-foster opened this issue Sep 20, 2024 · 2 comments

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@jd-foster
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Thanks for this great package.

I'm getting a crash when trying to do servedocs for the JuMP package documentation i.e.

julia --project=docs -ie 'using JuMP, LiveServer; servedocs()'

This is to do local iteration as while writing documentation.

The docs will fully build and be served, but then the build process will restart and then crash julia once a certain point is reached.

Crash log JuMP build log: 
[ Info: writing result to ~/.julia/dev/JuMP/docs/src/tutorials/applications/optimal_power_flow.md
Dispatch of Generators: [1000.0, 300.0] MW
Dispatch of Wind: 200.0 MW
Wind spillage: 0.0 MW
Total cost: $90000.0

Then crash log:

elapsed time: 0.0722050666809082 secondsglp_free: memory allocation error
Error detected in file env/alloc.c at line 70

[32728] signal (6): Abort trap: 6
in expression starting at ~/.julia/dev/JuMP/docs/src/tutorials/applications/power_systems.jl:238
__pthread_kill at /usr/lib/system/libsystem_kernel.dylib (unknown line)
pthread_kill at /usr/lib/system/libsystem_pthread.dylib (unknown line)
abort at /usr/lib/system/libsystem_c.dylib (unknown line)
errfunc at ~/.julia/artifacts/a8f69d41bc1a2b8d010db7eba6e1e89c06f026b9/lib/libglpk.40.dylib (unknown line)
dma at ~/.julia/artifacts/a8f69d41bc1a2b8d010db7eba6e1e89c06f026b9/lib/libglpk.40.dylib (unknown line)
_glp_lufint_delete at ~/.julia/artifacts/a8f69d41bc1a2b8d010db7eba6e1e89c06f026b9/lib/libglpk.40.dylib (unknown line)
_glp_fhvint_delete at ~/.julia/artifacts/a8f69d41bc1a2b8d010db7eba6e1e89c06f026b9/lib/libglpk.40.dylib (unknown line)
_glp_bfd_delete_it at ~/.julia/artifacts/a8f69d41bc1a2b8d010db7eba6e1e89c06f026b9/lib/libglpk.40.dylib (unknown line)
glp_delete_prob at ~/.julia/artifacts/a8f69d41bc1a2b8d010db7eba6e1e89c06f026b9/lib/libglpk.40.dylib (unknown line)
glp_delete_prob at ~/.julia/packages/GLPK/2y5V8/src/gen/libglpk_api.jl:98 [inlined]
#2 at ~/.julia/packages/GLPK/2y5V8/src/MOI_wrapper/MOI_wrapper.jl:189
unknown function (ip: 0x1095377ec)
_jl_invoke at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:0 [inlined]
ijl_apply_generic at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:3077
run_finalizer at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gc.c:318
jl_gc_run_finalizers_in_list at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gc.c:408
run_finalizers at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gc.c:454
jl_mutex_unlock at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/./julia_locks.h:80 [inlined]
ijl_task_get_next at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/partr.c:474
poptask at ./task.jl:985
wait at ./task.jl:994
#wait#645 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:142
wait at ./asyncevent.jl:159 [inlined]
sleep at ./asyncevent.jl:265 [inlined]
#serve#23 at ~/.julia/packages/LiveServer/0Pf77/src/server.jl:672
serve at ~/.julia/packages/LiveServer/0Pf77/src/server.jl:602 [inlined]
#servedocs#41 at ~/.julia/packages/LiveServer/0Pf77/src/utils.jl:283
servedocs at ~/.julia/packages/LiveServer/0Pf77/src/utils.jl:216
unknown function (ip: 0x1094db09c)
_jl_invoke at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:0 [inlined]
ijl_apply_generic at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/./julia.h:1982 [inlined]
do_call at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/interpreter.c:126
eval_body at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/interpreter.c:0
jl_interpret_toplevel_thunk at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/interpreter.c:775
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/toplevel.c:934
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/toplevel.c:877
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/toplevel.c:877
jl_toplevel_eval_flex at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/toplevel.c:877
ijl_toplevel_eval at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/toplevel.c:943 [inlined]
ijl_toplevel_eval_in at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/toplevel.c:985
eval at ./boot.jl:385 [inlined]
eval_user_input at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:150
repl_backend_loop at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:246
#start_repl_backend#46 at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:231
start_repl_backend at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:228
_jl_invoke at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:0 [inlined]
ijl_apply_generic at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:3077
#run_repl#59 at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:389
run_repl at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:375
jfptr_run_repl_91852 at ~/.julia/juliaup/julia-1.10.3+0.x64.apple.darwin14/lib/julia/sys.dylib (unknown line)
_jl_invoke at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:0 [inlined]
ijl_apply_generic at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:3077
#1013 at ./client.jl:432
jfptr_YY.1013_82819 at ~/.julia/juliaup/julia-1.10.3+0.x64.apple.darwin14/lib/julia/sys.dylib (unknown line)
_jl_invoke at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:0 [inlined]
ijl_apply_generic at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/./julia.h:1982 [inlined]
jl_f__call_latest at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/builtins.c:812
#invokelatest#2 at ./essentials.jl:892 [inlined]
invokelatest at ./essentials.jl:889 [inlined]
run_main_repl at ./client.jl:416
exec_options at ./client.jl:333
_start at ./client.jl:552
jfptr__start_82845 at ~/.julia/juliaup/julia-1.10.3+0.x64.apple.darwin14/lib/julia/sys.dylib (unknown line)
_jl_invoke at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:0 [inlined]
ijl_apply_generic at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/gf.c:3077
jl_apply at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/./julia.h:1982 [inlined]
true_main at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/jlapi.c:582
jl_repl_entrypoint at /Users/julia/.julia/scratchspaces/a66863c6-20e8-4ff4-8a62-49f30b1f605e/agent-cache/default-grannysmith-C07ZM05NJYVY.0/build/default-grannysmith-C07ZM05NJYVY-0/julialang/julia-release-1-dot-10/src/jlapi.c:731
Allocations: 895233856 (Pool: 894410843; Big: 823013); GC: 406
[1]    32728 abort      julia --project=docs

@odow Would appreciate it if you can reproduce?
@odow
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odow commented Sep 20, 2024

I'm seeing glp_delete_prob. This is likely not fixable.

I see use of @spawn in the source code of LiveServer.

GLPK is not thread safe: https://github.com/jump-dev/GLPK.jl?tab=readme-ov-file#thread-safety

I assume that when you make a change, a new thread tries to spin up. When we GC the other thread, it breaks the one currently running.

@jd-foster
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Yep, this makes sense. The option might be to either skip the examples/doctest with push!(ARGS, "--fast") or filter out the ones using GPLK (callbacks, benders_decomposition and tsp_lazy_constraints)

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