_config.yml

name: KG-Registry
title: The Knowledge Graph Registry
markdown: kramdown
highlighter: rouge
url: https://kghub.org
baseurl: /kg-registry
imgurl: /images
repo: https://github.com/Knowledge-Graph-Hub/kg-registry
repo_src: https://github.com/Knowledge-Graph-Hub/kg-registry/blob/main/
author:
  name: KG-Hub, a team based at the Lawrence Berkeley National Laboratory
plugins:
  - jekyll-sitemap
  - jekyll-feed
feed:
  disable_in_development: true
## --Anything above this line can be edited in _config_header.yml --
## --Everything below this line automatically generated in _config.yml --
ontologies:
- activity_status: active
  contact:
    email: smoxon@lbl.gov
    github: sierra-moxon
    label: Sierra Taylor Moxon
    orcid: 0000-0002-8719-7760
  description: Entity and association taxonomy and datamodel for life-sciences data
  domain: upper
  homepage: https://w3id.org/biolink/biolink-model.owl.ttl
  id: biolink
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: https://w3id.org/biolink/biolink.owl
  preferredPrefix: http
  products:
  - description: OWL release of Biolink-Model
    id: biolink_model.owl.ttl
    ontology_purl: http://purl.obolibrary.org/obo/biolink_model.owl.ttl
    title: Biolink-Model OWL release
  repository: https://github.com/biolink/biolink-model/
  title: Biolink-Model
  tracker: https://github.com/biolink/biolink-model/issues
  type: datamodel
  uri_prefix: https://w3id.org/biolink/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: Automatic translation of UCSC chromosome bands to OWL classes
  domain: chemistry and biochemistry
  homepage: http://purl.obolibrary.org/obo/chr.owl
  id: chr
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: http://purl.obolibrary.org/obo/chr.owl
  preferredPrefix: obo
  products:
  - description: OWL release of Monochrom Ontology
    id: chr.owl
    ontology_purl: http://purl.obolibrary.org/obo/chr.owl
    title: Monochrom Ontology OWL release
  repository: http://purl.obolibrary.org/obo/chr.owl
  title: Monochrom Ontology
  tracker: http://purl.obolibrary.org/obo/chr.owl
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: DrugBank
  domain: health
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: drugbank
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/drugbank.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of drugbank
    id: drugbank.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/drugbank/drugbank.owl
    title: drugbank OWL release
  - aggregator: biopragmatics
    description: OBO release of drugbank
    id: drugbank.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/drugbank/drugbank.obo
    title: drugbank OBO release
  - aggregator: biopragmatics
    description: SSSOM release of drugbank
    id: drugbank.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/drugbank/drugbank.sssom
    title: drugbank SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: drugbank
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: Ontology rendering of the EcoSIM Land System Model
  domain: environment
  homepage: http://purl.obolibrary.org/obo/ecosim.owl
  id: ecosim
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/ecosim.owl
  preferredPrefix: obo
  products:
  - description: OWL release of ecosim
    id: ecosim.owl
    ontology_purl: http://purl.obolibrary.org/obo/ecosim.owl
    title: ecosim OWL release
  repository: http://purl.obolibrary.org/obo/ecosim.owl
  title: ecosim
  tracker: http://purl.obolibrary.org/obo/ecosim.owl
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Chris Mungall
    orcid: 0000-0002-6601-2165
  dependencies:
  - id: envo
  - id: foodon
  - id: ncbitaxon
  - id: pco
  - id: po
  - id: uberon
  - id: mixs
  depicted_by: https://gold.jgi.doe.gov/images/logo-JGI-IMG-GOLD.png
  description: Translation of JGI GOLD path terms to OWL
  domain: environment
  homepage: https://gold.jgi.doe.gov/
  id: goldterms
  layout: ontology_detail
  ontology_purl: https://w3id.org/goldterms/goldterms.owl
  preferredPrefix: GOLDTERMS
  products:
  - id: goldterms.owl
    ontology_purl: https://w3id.org/goldterms/goldterms.owl
    title: main GOLDTERMS OWL release
  repository: https://github.com/cmungall/gold-ontology
  title: GOLD Environmental Paths
  tracker: https://github.com/cmungall/gold-ontology/issues
  type: ''
  uri_prefix: https://w3id.org/goldterms/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: HUGO Gene Nomenclature Committee
  domain: biological systems
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: hgnc
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/hgnc.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of hgnc
    id: hgnc.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/hgnc/hgnc.owl
    title: hgnc OWL release
  - aggregator: biopragmatics
    description: OBO release of hgnc
    id: hgnc.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/hgnc/hgnc.obo
    title: hgnc OBO release
  - aggregator: biopragmatics
    description: SSSOM release of hgnc
    id: hgnc.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/hgnc/hgnc.sssom
    title: hgnc SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: hgnc
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: InterPro is a database of protein families, domains and functional
    sites in which identifiable features found in known proteins can be applied to
    unknown protein sequences
  domain: biological systems
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: interpro
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: http://purl.obolibrary.org/obo/interpro.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of InterPro
    id: interpro.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/interpro/interpro.owl
    title: InterPro OWL release
  - aggregator: biopragmatics
    description: OBO release of InterPro
    id: interpro.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/interpro/interpro.obo
    title: InterPro OBO release
  - aggregator: biopragmatics
    description: SSSOM release of InterPro
    id: interpro.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/interpro/interpro.sssom
    title: InterPro SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: InterPro
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: jhc@lbl.gov
    github: caufieldjh
    label: J. Harry Caufield
    orcid: 0000-0001-5705-7831
  description: a Knowledge Graph for Illuminating the Druggable Genome
  domain: health
  homepage: https://kghub.org/kg-idg/index.html
  id: kg-idg
  layout: ontology_detail
  ontology_purl: https://w3id.org/kg-idg/kg-idg.owl
  preferredPrefix: http
  products:
  - description: KGX Distribution of KG-IDG
    format: kgx
    id: kg-idg.tar.gz
    ontology_purl: https://kg-hub.berkeleybop.io/kg-idg/current/kg-microbe.tar.gz
    title: KGX Distribution of KG-IDG
  repository: https://github.com/Knowledge-Graph-Hub/kg-idg
  title: KG-IDG
  tracker: https://github.com/Knowledge-Graph-Hub/kg-idg/issues
  type: ''
  uri_prefix: https://w3id.org/kg-idg/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: A Knowledge Graph about microbes
  domain: organisms
  homepage: https://kghub.org/kg-microbe/index.html
  id: kg-microbe
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: https://w3id.org/kg-microbe/kg-microbe.owl
  preferredPrefix: http
  products:
  - description: KGX Distribution of KGM
    format: kgx
    id: kg-microbe.tar.gz
    ontology_purl: https://kg-hub.berkeleybop.io/kg-microbe/current/kg-microbe.tar.gz
    title: KGX Distribution of KGM
  repository: https://github.com/Knowledge-Graph-Hub/kg-microbe
  title: KG Microbe
  tracker: https://github.com/Knowledge-Graph-Hub/kg-microbe/issues
  type: ''
  uri_prefix: https://w3id.org/kg-microbe/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: Monarch Initiative Knowledge Graph
  domain: health
  homepage: https://kghub.org/kg-monarch/index.html
  id: kg-monarch
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: https://w3id.org/kg-monarch/kg-monarch.owl
  preferredPrefix: http
  products:
  - description: KGX Distribution of KGM
    format: kgx
    id: kg-monarch.tar.gz
    ontology_purl: https://kg-hub.berkeleybop.io/kg-monarch/current/kg-monarch.tar.gz
    title: KGX Distribution of KGM
  repository: https://github.com/monarch-initiative/monarch-ingest
  title: KG Monarch
  tracker: https://github.com/monarch-initiative/monarch-ingest/issues
  type: ''
  uri_prefix: https://w3id.org/kg-monarch/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: A data model for describing change operations at a high level on an
    ontology or ontology-like artefact, such as a Knowledge Graph
  domain: information
  homepage: https://w3id.org/kgcl
  id: kgcl
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: https://w3id.org/kgcl.owl
  preferredPrefix: http
  products:
  - aggregator: null
    description: OWL release of Knowledge Graph Change Language
    id: kgcl.owl
    ontology_purl: http://purl.obolibrary.org/obo/kgcl.owl
    title: Knowledge Graph Change Language OWL release
  - aggregator: null
    description: OBO release of Knowledge Graph Change Language
    id: kgcl.obo
    ontology_purl: http://purl.obolibrary.org/obo/kgcl.obo
    title: Knowledge Graph Change Language OBO release
  repository: https://github.com/INCATools/kgcl/
  title: Knowledge Graph Change Language
  tracker: https://github.com/INCATools/kgcl/issues
  type: ''
  uri_prefix: https://w3id.org/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: mixs
  domain: environment
  homepage: https://w3id.org/mixs
  id: mixs
  layout: ontology_detail
  ontology_purl: https://w3id.org/mixs.owl
  preferredPrefix: http
  products:
  - aggregator: null
    description: OWL release of mixs
    id: mixs.owl
    ontology_purl: http://purl.obolibrary.org/obo/mixs.owl
    title: mixs OWL release
  - aggregator: null
    description: OBO release of mixs
    id: mixs.obo
    ontology_purl: http://purl.obolibrary.org/obo/mixs.obo
    title: mixs OBO release
  repository: https://w3id.org/mixs
  title: mixs
  tracker: https://w3id.org/mixs
  type: ''
  uri_prefix: https://w3id.org/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: Noctua Entity Ontology
  domain: biological systems
  homepage: http://purl.obolibrary.org/obo/go/noctua/neo.owl
  id: neo
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/go/noctua/neo.owl
  preferredPrefix: obo
  products:
  - description: OWL release of neo
    id: neo.owl
    ontology_purl: http://purl.obolibrary.org/obo/neo.owl
    title: neo OWL release
  repository: https://github.com/geneontology/neo/
  title: neo
  tracker: https://github.com/geneontology/neo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/go/noctua/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: ORCID in OWL
  domain: information
  homepage: https://github.com/cthoyt/orcidio
  id: orcid
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: https://w3id.org/orcidio/orcid.owl
  preferredPrefix: http
  products:
  - aggregator: obo
    description: OWL release of ORCID in OWL
    id: orcidio.owl
    ontology_purl: http://purl.obolibrary.org/obo/orcidio.owl
    title: ORCID in OWL OWL release
  - aggregator: obo
    description: OBO release of ORCID in OWL
    id: orcidio.obo
    ontology_purl: http://purl.obolibrary.org/obo/orcidio.obo
    title: ORCID in OWL OBO release
  repository: https://github.com/cthoyt/orcidio
  title: ORCID
  tracker: https://github.com/cthoyt/orcidio/issues
  type: ''
  uri_prefix: https://w3id.org/orcidio/
- activity_status: active
  contact:
    email: jmcl@ebi.ac.uk
    github: jamesamcl
    label: James McLaughlin
    orcid: 0000-0002-8361-2795
  description: An ontology for accessing and comparing knowledge concerning phenotypes
    across species and genetic backgrounds.
  domain: phenotype
  homepage: https://github.com/obophenotype/phenio
  id: phenio
  layout: ontology_detail
  license:
    label: CC0 1.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
    url: https://creativecommons.org/publicdomain/zero/1.0/
  ontology_purl: https://w3id.org/phenio/phenio.owl
  preferredPrefix: PHENIO
  products:
  - description: OWL version of phenio
    id: phenio.owl
    ontology_purl: https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.owl
    title: phenio
  - description: KGX version of phenio
    id: phenio.kgx
    ontology_purl: https://kg-hub.berkeleybop.io/kg-phenio/20241203/kg-phenio.tar.gz
    title: phenio KG
    type: kgx
  repository: https://github.com/monarch-initiative/phenio
  title: An integrated ontology for Phenomics
  tracker: https://github.com/monarch-initiative/phenio/issues
  type: ''
  uri_prefix: https://w3id.org/phenio/
  usages:
  - description: phenio is used by the Monarch Initiative for cross-species inference.
    examples:
    - description: Characteristic neurologic anomaly resulting form degeneration of
        dopamine-generating cells in the substantia nigra, a region of the midbrain,
        characterized clinically by shaking, rigidity, slowness of movement and difficulty
        with walking and gait.
      url: https://monarchinitiative.org/phenotype/HP:0001300#disease
    publications:
    - id: https://www.ncbi.nlm.nih.gov/pubmed/27899636
      title: 'The Monarch Initiative: an integrative data and analytic platform connecting
        phenotypes to genotypes across species '
    type: analysis
    user: https://monarchinitiative.org/
- activity_status: active
  contact:
    email: ben.mcgee.good@gmail.com
    github: goodb
    label: Benjamin M. Good
    orcid: 0000-0002-7334-7852
  description: Representation of entities in Reactome
  domain: biological systems
  homepage: http://purl.obolibrary.org/obo/go/extensions/reacto.owl
  id: reacto
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/go/extensions/reacto.owl
  preferredPrefix: obo
  products:
  - aggregator: null
    description: OWL release of Reactome Entity Ontology (REACTO)
    id: reacto.owl
    ontology_purl: http://purl.obolibrary.org/obo/reacto.owl
    title: Reactome Entity Ontology (REACTO) OWL release
  - aggregator: null
    description: OBO release of Reactome Entity Ontology (REACTO)
    id: reacto.obo
    ontology_purl: http://purl.obolibrary.org/obo/reacto.obo
    title: Reactome Entity Ontology (REACTO) OBO release
  repository: http://purl.obolibrary.org/obo/go/extensions/reacto.owl
  title: Reactome Entity Ontology (REACTO)
  tracker: http://purl.obolibrary.org/obo/go/extensions/reacto.owl
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/go/extensions/
- activity_status: active
  contact:
    email: cjmungall@lbl.gov
    github: cmungall
    label: Christopher J. Mungall
    orcid: 0000-0002-6601-2165
  description: Reactome from Biopax
  domain: biological systems
  homepage: https://reactome.org
  id: reactome
  layout: ontology_detail
  ontology_purl: http://www.reactome.org/reactome.owl
  preferredPrefix: Reactome
  products:
  - description: Conversion from BioPAX, human subset
    format: sqlite
    id: reactome-hs-biopax.db.gz
    ontology_purl: https://s3.amazonaws.com/bbop-sqlite/reactome-hs.db.gz
    title: Reactome Human from BioPAX, sqlite
  - description: Biopragmatics provided conversion, human subset
    format: obo
    id: reactome-hs-biopragmatics.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/reactome/reactome.obo
    title: Reactome Human, Biopragmatics
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: Reactome
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://www.reactome.org/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: Rhea is an expert-curated knowledgebase of chemical and transport reactions
    of biological interest
  domain: chemistry and biochemistry
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: rhea
  layout: ontology_detail
  license:
    label: CC BY 4.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
    url: https://creativecommons.org/licenses/by/4.0/
  ontology_purl: http://purl.obolibrary.org/obo/rhea.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of Rhea, the Annotated Reactions Database
    id: rhea.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/rhea/rhea.owl
    title: Rhea, the Annotated Reactions Database OWL release
  - aggregator: biopragmatics
    description: OBO release of Rhea, the Annotated Reactions Database
    id: rhea.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/rhea/rhea.obo
    title: Rhea, the Annotated Reactions Database OBO release
  - aggregator: biopragmatics
    description: SSSOM release of Rhea, the Annotated Reactions Database
    id: rhea.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/rhea/rhea.sssom
    title: Rhea, the Annotated Reactions Database SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: Rhea, the Annotated Reactions Database
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: The Saccharomyces Genome Database (SGD) project collects information
    and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae
  domain: biological systems
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: sgd
  layout: ontology_detail
  license:
    label: CC BY 4.0
    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
    url: https://creativecommons.org/licenses/by/4.0/
  ontology_purl: http://purl.obolibrary.org/obo/sgd.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of Saccharomyces Genome Database
    id: sgd.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/sgd/sgd.owl
    title: Saccharomyces Genome Database OWL release
  - aggregator: biopragmatics
    description: OBO release of Saccharomyces Genome Database
    id: sgd.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/sgd/sgd.obo
    title: Saccharomyces Genome Database OBO release
  - aggregator: biopragmatics
    description: SSSOM release of Saccharomyces Genome Database
    id: sgd.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/sgd/sgd.sssom
    title: Saccharomyces Genome Database SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: Saccharomyces Genome Database
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: SwissLipid
  domain: chemistry and biochemistry
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: swisslipid
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/swisslipid.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of swisslipid
    id: swisslipid.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/swisslipid/swisslipid.owl
    title: swisslipid OWL release
  - aggregator: biopragmatics
    description: OBO release of swisslipid
    id: swisslipid.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/swisslipid/swisslipid.obo
    title: swisslipid OBO release
  - aggregator: biopragmatics
    description: SSSOM release of swisslipid
    id: swisslipid.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/swisslipid/swisslipid.sssom
    title: swisslipid SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: swisslipid
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
- activity_status: active
  contact:
    email: cthoyt@gmail.com
    github: cthoyt
    label: Charles Tapley Hoyt
    orcid: 0000-0003-4423-4370
  description: UniProt Protein
  domain: biological systems
  homepage: https://biopragmatics.github.io/obo-db-ingest/
  id: uniprot
  layout: ontology_detail
  ontology_purl: http://purl.obolibrary.org/obo/uniprot.owl
  preferredPrefix: obo
  products:
  - aggregator: biopragmatics
    description: OWL release of uniprot
    id: uniprot.owl
    ontology_purl: https://w3id.org/biopragmatics/resources/uniprot/uniprot.owl
    title: uniprot OWL release
  - aggregator: biopragmatics
    description: OBO release of uniprot
    id: uniprot.obo
    ontology_purl: https://w3id.org/biopragmatics/resources/uniprot/uniprot.obo
    title: uniprot OBO release
  - aggregator: biopragmatics
    description: SSSOM release of uniprot
    id: uniprot.sssom
    ontology_purl: https://w3id.org/biopragmatics/resources/uniprot/uniprot.sssom
    title: uniprot SSSOM release
  repository: https://github.com/biopragmatics/obo-db-ingest
  title: uniprot
  tracker: https://github.com/biopragmatics/pyobo/issues
  type: ''
  uri_prefix: http://purl.obolibrary.org/obo/
principles:
- id: fp-000-summary
  layout: principle
  title: Overview
- id: fp-001-open
  layout: principle
  title: Open (principle 1)
- id: fp-002-format
  layout: principle
  title: Common Format (principle 2)
- id: fp-003-uris
  layout: principle
  title: URI/Identifier Space (principle 3)
- id: fp-004-versioning
  layout: principle
  title: Versioning (principle 4)
- id: fp-005-delineated-content
  layout: principle
  title: Scope (principle 5)
- id: fp-006-textual-definitions
  layout: principle
  title: Textual Definitions (principle 6)
- id: fp-007-relations
  layout: principle
  title: Relations (principle 7)
- id: fp-008-documented
  layout: principle
  title: Documentation (principle 8)
- id: fp-009-users
  layout: principle
  title: Documented Plurality of Users (principle 9)
- id: fp-010-collaboration
  layout: principle
  title: Commitment To Collaboration (principle 10)
- id: fp-011-locus-of-authority
  layout: principle
  title: Locus of Authority (principle 11)
- id: fp-012-naming-conventions
  layout: principle
  title: Naming Conventions (principle 12)
- id: fp-013-notification
  layout: principle
  title: Notification of Changes (principle 13)
- id: fp-016-maintenance
  layout: principle
  title: Maintenance (principle 16)
- id: fp-020-responsiveness
  layout: principle
  title: Responsiveness (principle 20)