You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Describe the bug test_install_github fails, preventing all PRs from passing
To Reproduce
cd scprep
pytest -v
Expected behavior
Passes.
Actual behavior
Fails.
======================================================================
ERROR: test_run.test_install_github_dependencies_None
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/scprep/scprep/test/test_run.py", line 58, in test_install_github_dependencies_None
scprep.run.install_github("twitter/AnomalyDetection", verbose=False)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 258, in install_github
**kwargs,
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/runner/work/scprep/scprep/scprep/utils.py", line 80, in _with_pkg
return fun(*args, **kwargs)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 124, in __call__
robject = self.function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 199, in __call__
.__call__(*args, **kwargs))
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface.py", line 680, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error: Failed to install 'unknown package' from GitHub:
cannot open URL 'https://api.github.com/repos/twitter/AnomalyDetection/contents/DESCRIPTION?ref=HEAD'
======================================================================
ERROR: test_run.test_install_github_dependencies_True
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/scprep/scprep/test/test_run.py", line 76, in test_install_github_dependencies_True
"twitter/AnomalyDetection", verbose=False, dependencies=True
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 258, in install_github
**kwargs,
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/runner/work/scprep/scprep/scprep/utils.py", line 80, in _with_pkg
return fun(*args, **kwargs)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 124, in __call__
robject = self.function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 199, in __call__
.__call__(*args, **kwargs))
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface.py", line 680, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error: Failed to install 'unknown package' from GitHub:
cannot open URL 'https://api.github.com/repos/twitter/AnomalyDetection/contents/DESCRIPTION?ref=HEAD'
======================================================================
ERROR: test_run.test_install_github_lib
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/scprep/scprep/test/test_run.py", line 47, in test_install_github_lib
scprep.run.install_github("twitter/AnomalyDetection", verbose=False)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 258, in install_github
**kwargs,
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/runner/work/scprep/scprep/scprep/utils.py", line 80, in _with_pkg
return fun(*args, **kwargs)
File "/home/runner/work/scprep/scprep/scprep/run/r_function.py", line 124, in __call__
robject = self.function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 199, in __call__
.__call__(*args, **kwargs))
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/robjects/functions.py", line 125, in __call__
res = super(Function, self).__call__(*new_args, **new_kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 45, in _
cdata = function(*args, **kwargs)
File "/opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/rpy2/rinterface.py", line 680, in __call__
raise embedded.RRuntimeError(_rinterface._geterrmessage())
rpy2.rinterface_lib.embedded.RRuntimeError: Error: Failed to install 'unknown package' from GitHub:
cannot open URL 'https://api.github.com/repos/twitter/AnomalyDetection/contents/DESCRIPTION?ref=HEAD'
scprep version master
The text was updated successfully, but these errors were encountered:
Describe the bug
test_install_github
fails, preventing all PRs from passingTo Reproduce
Expected behavior
Passes.
Actual behavior
Fails.
scprep version
master
The text was updated successfully, but these errors were encountered: