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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(associate_phenotype)
export(bio_enrich)
export(build_graph_from_sq_mat)
export(build_net)
export(compare_conditions)
export(detect_modules)
export(filter_RNA_seq)
export(filter_low_var)
export(get_fit.cor)
export(get_fit.expr)
export(get_hub_degree)
export(get_hub_genes)
export(get_hub_high_co)
export(get_hub_kleinberg)
export(get_sub_clusters)
export(is_data_expr)
export(is_gost)
export(is_module)
export(is_network)
export(join_gost)
export(plot_comparison_stats)
export(plot_enrichment)
export(plot_expression_profiles)
export(plot_module)
export(plot_modules_merge)
export(plot_modules_phenotype)
export(z_summary)
import(igraph)
importFrom(NetRep,modulePreservation)
importFrom(RColorBrewer,brewer.pal)
importFrom(SummarizedExperiment,assay)
importFrom(WGCNA,TOMsimilarity)
importFrom(WGCNA,adjacency.fromSimilarity)
importFrom(WGCNA,bicor)
importFrom(WGCNA,cor)
importFrom(WGCNA,corPvalueStudent)
importFrom(WGCNA,mergeCloseModules)
importFrom(WGCNA,pickSoftThreshold.fromSimilarity)
importFrom(cluster,pam)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_if)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,top_frac)
importFrom(dplyr,top_n)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(gprofiler2,gost)
importFrom(gprofiler2,gostplot)
importFrom(grDevices,hcl)
importFrom(graphics,legend)
importFrom(graphics,plot)
importFrom(graphics,symbols)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add_layout_)
importFrom(igraph,as_bipartite)
importFrom(igraph,degree)
importFrom(igraph,delete.edges)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,hub_score)
importFrom(igraph,norm_coords)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_colnames)
importFrom(magrittr,set_rownames)
importFrom(matrixStats,colMaxs)
importFrom(matrixStats,colMeans2)
importFrom(matrixStats,colMins)
importFrom(methods,is)
importFrom(purrr,compact)
importFrom(rlist,list.merge)
importFrom(stats,as.dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,str_c)
importFrom(stringr,str_extract)
importFrom(stringr,str_sort)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,one_of)
importFrom(tidyr,pivot_longer)
importFrom(utils,lsf.str)
importFrom(utils,stack)