Changes in version 0.99.106 (2020-06-29)
- Submitted to Bioconductor
Changes in version 1.0.0 (2020-10-27)
- Accepted by Bioconductor. Included in RELEASE 3.12
Changes in version 1.0.1 (2020-01-26)
- Fixed bug. Tests calling gprofiler now fixed to avoir error based on databases updates
- Corrected undocumented params
Changes in version 1.1.5
- Added a sub module detection function : get_sub_clusters()
- Added a coloration argument on plot_module() to color graph according to given groups
- Added warnings on suspicious power fitted and FAQ to help their resolution (get_fit.cor(), get_fit.expr(), build_net())
- Added handling of NA in model matrix of associate_phenotype() and warnings when they are present
- Added use of other correlation function in associate_phenotype()
- Added a ggplot2 like palette generator (internal)
- Removed hard coded arguments : o alpha for plot_expression_profiles() o text angle for plot_comparison_stats(), plot_modules_phenotype() o deepSplit for detect_modules()
- Changed WGCNA::cor() + WGCNA::corPvalueStudent() functions for WGCNA::corAndPvalue()
- Changed erroneous info on SVD/PCA in FAQ