Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

segfault, fault detected at statistics calculation #5

Open
raeece opened this issue Sep 29, 2016 · 1 comment
Open

segfault, fault detected at statistics calculation #5

raeece opened this issue Sep 29, 2016 · 1 comment

Comments

@raeece
Copy link

raeece commented Sep 29, 2016

I get a segmentation fault in the splitrim program. Could it be the number of reads in the file is too high ?
My fastq file has 155 million reads.

Here is the log
----> ENTRY HEADER:@K00235:18:H5TT3BBXX:5:1101:1771:1228 1:N:0:GGCTAC
Threads: 1 (effective) 1 (requested)
IDX = 0: reading from 0 to 54584510192
Staggering at 125000 reads; processed 125000 reads
IDX(0) counted 155328521 reads
GLOBAL READ COUNT = 155328521
Trim Time: 3453335 ms

Warning: fault detected in statistics calculation!
-> Check either (1) the input ASCII encoding or (2) the # of reads passing filters

PROGRAM ELAPSED TIME: 4371089 ms
Segmentation fault

@TakacsBertalan
Copy link

Hi!
This repo seems dead know but I am wondering if you could solve this issue? (If you can remember after 7 years...) I am having the exact same problem.

Thanks,
Bertalan Takács

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants