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I get a segmentation fault in the splitrim program. Could it be the number of reads in the file is too high ?
My fastq file has 155 million reads.
Here is the log
----> ENTRY HEADER:@K00235:18:H5TT3BBXX:5:1101:1771:1228 1:N:0:GGCTAC
Threads: 1 (effective) 1 (requested)
IDX = 0: reading from 0 to 54584510192
Staggering at 125000 reads; processed 125000 reads
IDX(0) counted 155328521 reads
GLOBAL READ COUNT = 155328521
Trim Time: 3453335 ms
Warning: fault detected in statistics calculation!
-> Check either (1) the input ASCII encoding or (2) the # of reads passing filters
PROGRAM ELAPSED TIME: 4371089 ms
Segmentation fault
The text was updated successfully, but these errors were encountered:
Hi!
This repo seems dead know but I am wondering if you could solve this issue? (If you can remember after 7 years...) I am having the exact same problem.
I get a segmentation fault in the splitrim program. Could it be the number of reads in the file is too high ?
My fastq file has 155 million reads.
Here is the log
----> ENTRY HEADER:@K00235:18:H5TT3BBXX:5:1101:1771:1228 1:N:0:GGCTAC
Threads: 1 (effective) 1 (requested)
IDX = 0: reading from 0 to 54584510192
Staggering at 125000 reads; processed 125000 reads
IDX(0) counted 155328521 reads
GLOBAL READ COUNT = 155328521
Trim Time: 3453335 ms
Warning: fault detected in statistics calculation!
-> Check either (1) the input ASCII encoding or (2) the # of reads passing filters
PROGRAM ELAPSED TIME: 4371089 ms
Segmentation fault
The text was updated successfully, but these errors were encountered: