Test on smaller pdb for guesser to reduce test duration #4893
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #4893 +/- ##
===========================================
- Coverage 93.65% 93.63% -0.03%
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Files 177 189 +12
Lines 21795 22861 +1066
Branches 3067 3067
===========================================
+ Hits 20413 21406 +993
- Misses 931 1004 +73
Partials 451 451 ☔ View full report in Codecov by Sentry. |
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Fixes #4842
Changes made in this Pull Request:
PDB_smallfor guesser tests.Reduce from
============================= slowest 50 durations =============================
93.06s call MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guessing_angles_respects_bond_kwargs
40.04s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-2-15]
39.70s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-None-30]
39.64s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-50-2-25]
38.50s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-None-2-49]
30.85s call MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD1]
30.65s call MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD1]
28.09s call MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_out_of_order_guess
26.96s call MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_contacts_selections[client_Contacts1]
26.27s call MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_out_of_order_init
23.74s setup MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT1]
to
============================= slowest 50 durations =============================
39.72s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-2-15]
39.54s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-None-30]
39.50s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-50-2-25]
39.38s call MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-None-2-49]
29.26s call MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD1]
29.25s call MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD1]
26.90s call MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_contacts_selections[client_Contacts1]
23.60s setup MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT1]
19.68s call MDAnalysisTests/guesser/test_default_guesser.py::test_aromaticity
17.90s call MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD1]
17.79s call MDAnalysisTests/coordinates/test_pdb.py::test_conect_bonds_all