Bump version: 1.0.0 → 1.1.0 #16
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| tags: | |
| - v* | |
| branches: | |
| - 'master' | |
| - 'main' | |
| paths: | |
| - '**.py' | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| branches: [ master ] | |
| inputs: | |
| tags: | |
| description: "Testing workflow" | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, bioconda | |
| activate-environment: ngmaster | |
| - name: Install ngmaster and dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda install flake8 mlst | |
| pip install . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Run test | |
| shell: bash -l {0} | |
| run: ngmaster --test | |
| build-n-publish: | |
| name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI | |
| needs: test | |
| runs-on: ubuntu-18.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - name: Install pypa/build | |
| run: >- | |
| python -m | |
| pip install | |
| build | |
| --user | |
| - name: Build a binary wheel and a source tarball | |
| run: >- | |
| python -m | |
| build | |
| --sdist | |
| --wheel | |
| --outdir dist/ | |
| . | |
| - name: Publish distribution 📦 to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.test_pypi_password }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| skip_existing: true | |
| - name: Publish distribution 📦 to PyPI | |
| if: startsWith(github.ref, 'refs/tags') || startsWith(github.event.inputs.tags, 'Deploy') | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.pypi_password }} |