hmmer3.build

. ./tools.config

set -e

VERSION=3.4
wget -q http://eddylab.org/software/hmmer/hmmer-${VERSION}.tar.gz 
tar xzf hmmer-${VERSION}.tar.gz 
rm hmmer-${VERSION}.tar.gz 
cd hmmer-${VERSION} 
#patch -p1 < ../patches/hmmer3-check-instdir.patch 
#patch -p1 < ../patches/hmmer-3.1b2-manperms.patch
#patch -p1 < ../patches/hmmer-3.1b2-hmmbuild-segfault.patch
#patch -p1 < ../patches/hmmer_seek_instead_reopen.patch 
#patch -p1 < ../patches/hmmer-3.1b2-mmap.patch

#autoconf
#cd easel
#autoconf
#cd ..

./configure --prefix=${PREFIX} \
    --enable-pic 
#    --enable-mmap 
make ${MAKE_FLAGS}
make install-strip
cd .. 
rm -rf hmmer-${VERSION}

rm -f ${PREFIX}/share/man/man1/{hmmer,hmmalign,hmmbuild,hmmemit,hmmconvert,hmmlogo,hmmfetch,hmmpgmd_shard}.1
rm -f ${PREFIX}/share/man/man1/{hmmpgmd,hmmscan,hmmpress,hmmsim,hmmsearch,jackhmmer,hmmstat,phmmer,makehmmerdb}.1
rm -f ${PREFIX}/share/man/man1/{nhmmer,nhmmscan,alimask}.1