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The function plot.mob_out provides the plot-based rarefaction curve which is the individual rarefaction curve evaluated at # of plots * treatment specific density. Currently this sampling effort is rounded (from the script ./R/mobr.R):
The need to round the sampling effort is because of the binomial coefficient only takes integers; however, the formula for individual-based rarefaction can be reformulated using the gamma function which can handle non-integer values. We could use instead:
This would harness the gamma formulated form but not rescale the curve any. @rueuntal what do you think - probably this isn't going to make a huge deal but it seems like it would be nice to get away from rounding the sampling effort since we have the code in place to do this anyways.
The text was updated successfully, but these errors were encountered:
The function
plot.mob_out
provides the plot-based rarefaction curve which is the individual rarefaction curve evaluated at # of plots * treatment specific density. Currently this sampling effort is rounded (from the script./R/mobr.R
):The need to round the sampling effort is because of the binomial coefficient only takes integers; however, the formula for individual-based rarefaction can be reformulated using the gamma function which can handle non-integer values. We could use instead:
This would harness the gamma formulated form but not rescale the curve any. @rueuntal what do you think - probably this isn't going to make a huge deal but it seems like it would be nice to get away from rounding the sampling effort since we have the code in place to do this anyways.
The text was updated successfully, but these errors were encountered: