Evo2 #694
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Evo2 #694
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…ing, default 0 for topk/topp.
… debt in tokenizer and config, remove unused args in infer.py.
…d add transcript splicing script for preprocessing.
…ate test to use new checkpoint
Signed-off-by: John St John <[email protected]>
Refactor out Fasta dataset class to its own file and add tests. Signed-off-by: Jared Wilber <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
trvachov
approved these changes
Mar 4, 2025
skothenhill-nv
approved these changes
Mar 4, 2025
pstjohn
reviewed
Mar 4, 2025
pstjohn
reviewed
Mar 4, 2025
pstjohn
reviewed
Mar 4, 2025
Update README to mention predict functionality. I currently link to the not-yet-built docs - not sure if we want to change that or not --------- Signed-off-by: Jared Wilber <[email protected]>
Signed-off-by: Jared Wilber <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
pstjohn
approved these changes
Mar 4, 2025
…ess stringent fast test Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
Signed-off-by: John St John <[email protected]>
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Description
This provides an implementation of Evo2 supporting pre-training, fine-tuning and preprocessing of data for Evo2 from fasta files. This makes use of the new Hyena/Evo2 model support in NVIDIA/NeMo#12263.
Known issues
Type of changes
Pre-submit Checklist