Simple Traceback Example

[r-barnes]

The file examples/proteinsw/proteinsw.cu contains a simple example of scoring potential alignments.

Is a similarly simple example available of traceback?

[foertter]

I think everything the original authors had is in this repo. Were you able to create one by any chance?

[r-barnes]

@foertter : I'm afraid I wasn't able to get Smith-Waterman tracebacks working. I'll take another look over the next few days and see if I can do a better job figuring them out this time. I have a new, GPU enabled Thinkpad, so that's easier now! (Don't worry: the old one's still working fine.)