test_movie_cell.sh

#!/bin/bash

cd SimulationDataCell


### Generate POVRay files (split between cells & network) from NeuroML
python ../NeuroML1ToPOVRay.py MyCellNet.nml1 -split -scalex 2 -scalez 1.2  -background "<0,0,0,0.55>" 


### Read in simulation as used in MyNetwork.nml1 & generate new POVRay files for each frame, coloured with cell segment activity
python ../OverlaySimulation.py MyCellNet -singlecell CGnRT_0 -skip 5 -startTime 30 -endTime 40 -maxV 40 -minV -90 -rotations 0.5 -rainbow 


### Execute bash script to run povray on each frame file
chmod +x MyCellNet_pov.sh
./MyCellNet_pov.sh


cd -