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Using fastv to save reference matching reads #11

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intikhab opened this issue Dec 25, 2020 · 0 comments

intikhab commented Dec 25, 2020

Dear FastV team,

Thanks for your wonderful software, I can see there is an option to save reads matching the reference.

Can I ask are these all QC passed reads which are saved after mapping?

Is it possible in fastv to save the consensus fasta sequence from the matched reads or it would require a separate assembly from saved reads?

I am using Illumina as well as ONT reads to find positive reads for a reference genome.

Many Thanks,

Intikhab

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