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Copy pathLEMS_Figure2.xml
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LEMS_Figure2.xml
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<Lems xmlns="http://www.neuroml.org/lems/0.7.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/lems/0.7.2 https://raw.githubusercontent.com/LEMS/LEMS/development/Schemas/LEMS/LEMS_v0.7.2.xsd">
<!--Include standard NeuroML 2 ComponentType definitions-->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>
<!-- Channel/synapse files-->
<Include file="base.channel.nml"/>
<Include file="somaLeak.channel.nml"/>
<Include file="Na.channel.nml"/>
<Include file="Kdr.channel.nml"/>
<Include file="dendriteLeak.channel.nml"/>
<Include file="Cad.channel.nml"/>
<Include file="Kahp.channel.nml"/>
<Include file="KC.channel.nml"/>
<Include file="Nmda.channel.nml"/>
<Include file="Ampa.channel.nml"/>
<!-- Cell files-->
<Include file="baseChannelDensities.nml"/>
<Include file="channelDensitiesSoma.nml"/>
<Include file="channelDensitiesDendrite.nml"/>
<Include file="twoCompartmentCell.cell.nml" />
<Include file="Figure2Aand3.parameters.nml" />
<Include file="Figure2B.parameters.nml" />
<Include file="Figure2C.parameters.nml" />
<Include file="Figure2D.parameters.nml" />
<Include file="Figure2E.parameters.nml" />
<Target component="sim1"/>
<network id="net1">
<population id="prApop" component="pr2A" size="1"/>
<population id="prBpop" component="pr2B" size="1"/>
<population id="prCpop" component="pr2C" size="1"/>
<population id="prDpop" component="pr2D" size="1"/>
<population id="prEpop" component="pr2E" size="1"/>
</network>
<Simulation id="sim1" length="1500ms" step="0.005ms" target="net1">
<Display id="Fig2AVs" title="Figure 2A somatic input, left: Vs" timeScale="1ms" xmin="-100" xmax="1600" ymin="-70" ymax="40">
<Line id="Vs" quantity="prApop[0]/Vs" scale="0.001" color="#000000" timeScale="1ms"/>
</Display>
<Display id="Fig2ACaq" title="Figure 2A somatic input, right: Ca, q" timeScale="1ms" xmin="-100" xmax="1600" ymin="-0.05" ymax=".6">
<Line id="Ca" quantity="prApop[0]/Cad" scale="666.7" color="#000000" timeScale="1ms"/>
<Line id="q" quantity="prApop[0]/qd" scale="1" color="#FF0000" timeScale="1ms"/>
</Display>
<OutputFile id="Fig2A_Vs" fileName="Fig2A_Vs.dat">
<OutputColumn id="v0" quantity="prApop[0]/Vs" />
</OutputFile>
<Display id="Fig2BVs" title="Figure 2B dendritic input, left: Vs" timeScale="1ms" xmin="-100" xmax="1600" ymin="-70" ymax="40">
<Line id="Vs" quantity="prBpop[0]/Vs" scale="0.001" color="#000000" timeScale="1ms"/>
</Display>
<Display id="Fig2BCaq" title="Figure 2B dendritic input, right: Ca, q" timeScale="1ms" xmin="-100" xmax="1600" ymin="-0.05" ymax=".6">
<Line id="Ca" quantity="prBpop[0]/Cad" scale="666.7" color="#000000" timeScale="1ms"/>
<Line id="q" quantity="prBpop[0]/qd" scale="1" color="#FF0000" timeScale="1ms"/>
</Display>
<OutputFile id="Fig2B_Vs" fileName="Fig2B_Vs.dat">
<OutputColumn id="v0" quantity="prBpop[0]/Vs" />
</OutputFile>
<Display id="Fig2CVs" title="Figure 2C strong somatic input, left: Vs" timeScale="1ms" xmin="-100" xmax="1600" ymin="-70" ymax="40">
<Line id="Vs" quantity="prCpop[0]/Vs" scale="0.001" color="#000000" timeScale="1ms"/>
</Display>
<Display id="Fig2CCaq" title="Figure 2C somatic input, right: Ca, q" timeScale="1ms" xmin="-100" xmax="1600" ymin="-0.05" ymax=".6">
<Line id="Ca" quantity="prCpop[0]/Cad" scale="666.7" color="#000000" timeScale="1ms"/>
<Line id="q" quantity="prCpop[0]/qd" scale="1" color="#FF0000" timeScale="1ms"/>
</Display>
<OutputFile id="Fig2C_Vs" fileName="Fig2C_Vs.dat">
<OutputColumn id="v0" quantity="prCpop[0]/Vs" />
</OutputFile>
<Display id="Fig2DVs" title="Figure 2D strong somatic input, tight coupling, left: Vs" timeScale="1ms" xmin="-100" xmax="1600" ymin="-70" ymax="40">
<Line id="Vs" quantity="prDpop[0]/Vs" scale="0.001" color="#000000" timeScale="1ms"/>
</Display>
<Display id="Fig2DCaq" title="Figure 2D somatic input, tight coupling, right: Ca, q" timeScale="1ms" xmin="-100" xmax="1600" ymin="-0.05" ymax=".6">
<Line id="Ca" quantity="prDpop[0]/Cad" scale="666.7" color="#000000" timeScale="1ms"/>
<Line id="q" quantity="prDpop[0]/qd" scale="1" color="#FF0000" timeScale="1ms"/>
</Display>
<OutputFile id="Fig2D_Vs" fileName="Fig2D_Vs.dat">
<OutputColumn id="v0" quantity="prDpop[0]/Vs" />
</OutputFile>
<Display id="Fig2EVs" title="Figure 2E dendritic input, weak coupling, left: Vs" timeScale="1ms" xmin="-100" xmax="1600" ymin="-70" ymax="40">
<Line id="Vs" quantity="prEpop[0]/Vs" scale="0.001" color="#000000" timeScale="1ms"/>
</Display>
<Display id="Fig2ECaq" title="Figure 2E dendritic input, weak coupling, right: Ca, q" timeScale="1ms" xmin="-100" xmax="1600" ymin="-0.05" ymax=".6">
<Line id="Ca" quantity="prEpop[0]/Cad" scale="666.7" color="#000000" timeScale="1ms"/>
<Line id="q" quantity="prEpop[0]/qd" scale="1" color="#FF0000" timeScale="1ms"/>
</Display>
<OutputFile id="Fig2E_Vs" fileName="Fig2E_Vs.dat">
<OutputColumn id="v0" quantity="prEpop[0]/Vs" />
</OutputFile>
</Simulation>
</Lems>