non-omv.yml

name: Testing non OMV scripts

on:
  push:
    branches: [ master, development, experimental, test*, feature/* ]
  pull_request:
    branches: [ master, development, experimental, test*, feature/* ]
      
jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: [ "3.10", "3.11" ]

    steps:
    - uses: actions/checkout@v4

    - name: Set up Python  ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version:  ${{ matrix.python-version }}

    - name: Install OMV
      run: |
        pip install git+https://github.com/OpenSourceBrain/osb-model-validation

    - name: Run tests
      run: |
        omv install jneuroml

    - name: Test tellurium
      run: |
        pip install tellurium
        sudo apt-get install libncurses5 --fix-missing
        cd tellurium
        python simple.py -nogui

        cd ../SBML/tests
        pip install python-libsedml
        python ./test_tellurium.py 

    - name: Test validity of files
      run: |
        pip install pyNeuroML pyNeuroML[annotations]
        cd SBML/tests
        ./validateAll.sh

    - name: Test omex file creation
      run: |
        pip install "pymetadata>=0.4.2" docker "requests<2.32.0"
        cd SBML/tests    
        python ./test_biosimulators_docker.py

    - name: Test test_suite output regeneration
      run: |
        cd test_suite        
        ./test_results_regeneration.sh

    - name: Final version info
      run: |
        omv list -V # list installed engines
        pip list
        env

    - name: Create results table
      run: |
        cd SBML/tests
        python ./test_creation_combined_results_table.py